Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01323 ATGACCGTTCCTGCTTCCGGTTTTACGATGGAAAACGGCGGATCAAGCTGCCTGCCACTCCCTCCAGATGTCGAGAATCGGATCGTCACCGACCTGGGGAAGGAATCTGAGTCTAATTTGCAAGAAGGCAATCTCTACTATGTTGTTTCTAATCGGTGGTTTAGAAGATGGCAGTTATATGTTGGACAGCCTACTGAAGAATTTTCTAGCAAAGATCATTCCTCTGATTCCCAACACTGTAATATGGTTCCTTCAAACGTGGTAGAAACGCCCGGTCCTATTGACAATTCAGATATAGTCATTAATGGAAGTGATTCTGAGAATAATGATTTAGAGCTAAAAAGATTTTTGGAGGAACGACGGGATTATGTTTTGGTTCCCAGTGCAGTTTGGGAAAAACTGTATGATTGGTACAAAGGGGGGCCACCGTTACCAAGAAAGTTGATATCCCAAGGTGTCACTCAAAAGAATTTTTATGTGGAGGTTTATCTACTTTGTCTAAAATTGATTGATTCCAGAGATGGAAGTGAATGTATCATACGATTGAGCAAGAAGGCCACCGTATTTGATCTTCGTGAGAAGGTGTTTGCACTTAAAGGAATAAAGCAGGAAAAGGCGTGTATATGGGATTACTTCAACCAGCATAAACAATCAATATTGGATGCGACAAGCCAAACCCTCGAAGAACTAAACTTGCAGATGGATCAACATATCCTCCTTGAAGTTGATGGACCTACTCAGACTGGCATGGATGCCACTCGAAATGAGTTAGCTTTGGTAGCTCTTGAACCTTCAAGATCATCTCTGTCAATTGCAGGGGGGCCAGTGATGTCAAATGGACATTCATCCAGTTATGGTTATCAAGGAAGTTCTTTGAGCTCATCAGTTTCTGACATGGATGACAGAAGTGATCTTAGTAATACTGCAAAGAAAAGAGAGAAGGGTGGTTTGGCAGGGTTGCAGAATTTAGGAAATACATGTTTCATGAACAGTGCCCTTCAATGTTTAGTTCACACGCCACCTCTTGTAGAGTATTTTTTACAAGATTATTCTGAAGAGATCAATGCAGATAATCCTTTGGGAATGCACGGAGAGTTAGCCATTGCTTTTGGGGACTTATTGAGGAAATTATGGTCGCTGGGACAGACCACAATTGCACCACGTGCATTTAAGGGGAAGTTGGCTCGTTTTGCTCCTCAGTTCAGTGGTTATAACCAGCATGATTCCCAAGAACTTCTTGCCTTCTTACTGGATGGACTGCATGAAGATTTGAATCGTGTTAAACGGAAGCCTTATTTTGAAACAAAGGATTATGATGGTCGTCCAGATGCAGAAGTTGCAGATGAGTGTTGGAGATACCATAGAGCACGAAATGATTCTTTGATTGTAGATGTTTGTCAAGGTCAATATAAGTCGACATTGGTTTGTCCAGTATGTGGAAAAATCTCAATTACTTTTGATCCATTTATGTATTTATCATTGCCGCTACCTTCAACTGTCACTCGCAGTGTGACAGTGACTGTGTTCTATGGTGACGGTAGTGGTCTTCCAATGCCATACACTGTGACAGTGCAAAGACATGGTTGTATCAAAGATCTCACCCTTGCATTGACTATTGCATGCTGCTTGAAGAATGATGAAAATCTTCTGCTTGCAGAGGTTTATGATCACCGTATTTACAAATATTTTGATAACCCTCTTGAATCTGTGACTTCAATTAAAGATGAAGAGTATCTAGTTGCATATCGCCTTCCAAAAAGTGAGTCTGGAAGACCAAAGCTCGAGATCATTCACAGATCGCTGGAAAGATGCTCAACTGACCGTCTGAAGGGAATGGAGAGAAAGCTTTTTGGAACTCCTCTAGTCACATATTTGGGAGAAGAGTTCCGTAGTGGAGCCGACATTAATGCAGCTGTGTCTAAGATTCTCGTTCCCTTGAAAAGAACGTACTCTTCAACTAAAGCTCATAGTAGCAAAGAAAATGGCTTCGTTTCTGAAATGAATGATGAACCAGCCAACTGCAGTCCTCGGTCTGTTTCCCAGTCAATTGACATTGAAGAAGAGGAAACATCATTTGAGAAAGAGCCATCCTTTCAACTTCTTTTAACAGATGATAGGGGTTTGAGCTGCAAGCCAATTGACAAGGACTCTGCTATAAAGTATGGTCCACTTATAAAGGTTTTCTTGGATTGGACCGACAGAGAACATGAATTATATGATATGAGCTACATCAAGGATCTTCCTCCCGTTCACCAGACAAGGTTCATGAAGAAAACGCGGCAGGAAGCAATATCTTTATTTTCTTGCTTGGAAGCCTTCCTTACTGAAGAGCCTTTAGGTCCTGATGATATGTGGTACTGCCCTAGGTGCAAGGAGCATAGACAGGCTACAAAGAAGTTAGACTTGTGGAAGTTGCCAGAGATTATTGTTTTTCACTTGAAACGTTTTTCATACAGCAGATATCTCAAAAACAAGCTCGATACCTTTGTGGATTTCCCTATTCACAATCTTGATTTGAGTAAATATGTCAAAAGCAATGATGGAAAGTCTTACTTGTACAACCTATATGCCATTAGCAACCATTATGGTGGTCTTGGCGGTGGTCACTACACTGCATACGCAAAGTTAATCGATGAGAAGAGATGGTACCACTTTGATGACAGTCATGTTTCCCCAGTTGGCGAAGAAGAGATAAAGACATCGGCTGCTTATTTGTTGTTCTATCAAAGAGTTGAAAATTGA 2742 41.17 MTVPASGFTMENGGSSCLPLPPDVENRIVTDLGKESESNLQEGNLYYVVSNRWFRRWQLYVGQPTEEFSSKDHSSDSQHCNMVPSNVVETPGPIDNSDIVINGSDSENNDLELKRFLEERRDYVLVPSAVWEKLYDWYKGGPPLPRKLISQGVTQKNFYVEVYLLCLKLIDSRDGSECIIRLSKKATVFDLREKVFALKGIKQEKACIWDYFNQHKQSILDATSQTLEELNLQMDQHILLEVDGPTQTGMDATRNELALVALEPSRSSLSIAGGPVMSNGHSSSYGYQGSSLSSSVSDMDDRSDLSNTAKKREKGGLAGLQNLGNTCFMNSALQCLVHTPPLVEYFLQDYSEEINADNPLGMHGELAIAFGDLLRKLWSLGQTTIAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKRKPYFETKDYDGRPDAEVADECWRYHRARNDSLIVDVCQGQYKSTLVCPVCGKISITFDPFMYLSLPLPSTVTRSVTVTVFYGDGSGLPMPYTVTVQRHGCIKDLTLALTIACCLKNDENLLLAEVYDHRIYKYFDNPLESVTSIKDEEYLVAYRLPKSESGRPKLEIIHRSLERCSTDRLKGMERKLFGTPLVTYLGEEFRSGADINAAVSKILVPLKRTYSSTKAHSSKENGFVSEMNDEPANCSPRSVSQSIDIEEEETSFEKEPSFQLLLTDDRGLSCKPIDKDSAIKYGPLIKVFLDWTDREHELYDMSYIKDLPPVHQTRFMKKTRQEAISLFSCLEAFLTEEPLGPDDMWYCPRCKEHRQATKKLDLWKLPEIIVFHLKRFSYSRYLKNKLDTFVDFPIHNLDLSKYVKSNDGKSYLYNLYAISNHYGGLGGGHYTAYAKLIDEKRWYHFDDSHVSPVGEEEIKTSAAYLLFYQRVEN 913
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8308673 8322298 + CmaCh15G013230.1 Cma15g01323 310473

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01323 913 MobiDBLite consensus disorder prediction 657 679 - -
Cma15g01323 913 ProSiteProfiles DUSP domain profile. 20 149 IPR006615 GO:0004843
Cma15g01323 913 MobiDBLite consensus disorder prediction 284 302 - -
Cma15g01323 913 CDD Peptidase_C19R 756 909 - -
Cma15g01323 913 MobiDBLite consensus disorder prediction 284 311 - -
Cma15g01323 913 Gene3D - 9 162 IPR035927 -
Cma15g01323 913 Pfam DUSP domain 44 149 IPR006615 GO:0004843
Cma15g01323 913 Gene3D - 163 248 - -
Cma15g01323 913 SUPERFAMILY DUSP-like 22 149 IPR035927 -
Cma15g01323 913 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 318 911 IPR028889 -
Cma15g01323 913 SMART dusp 39 152 IPR006615 GO:0004843
Cma15g01323 913 Pfam Ubiquitin carboxyl-terminal hydrolase 319 908 IPR001394 GO:0004843|GO:0016579
Cma15g01323 913 Gene3D Cysteine proteinases 301 514 - -
Cma15g01323 913 MobiDBLite consensus disorder prediction 1 22 - -
Cma15g01323 913 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 853 870 IPR018200 GO:0004843|GO:0006511
Cma15g01323 913 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 319 334 IPR018200 GO:0004843|GO:0006511
Cma15g01323 913 Gene3D Cysteine proteinases 646 913 - -
Cma15g01323 913 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 16 912 - -
Cma15g01323 913 SUPERFAMILY Cysteine proteinases 316 911 IPR038765 -
Cma15g01323 913 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10-RELATED 16 912 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01323 - - - mcha:111023427 1639.4
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g00538 Cma15g01323 CCT
Cma02g00946 Cma15g01323 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01298 Cma-Chr2:7639413 Cma15g01323 Cma-Chr15:8308673 0 dispersed
Cma05g01265 Cma-Chr5:9667731 Cma15g01323 Cma-Chr15:8308673 1.80E-16 dispersed
Cma06g00538 Cma-Chr6:2535326 Cma15g01323 Cma-Chr15:8308673 0 dispersed
Cma06g01231 Cma-Chr6:8207458 Cma15g01323 Cma-Chr15:8308673 5.49E-10 dispersed
Cma14g01897 Cma-Chr14:13415635 Cma15g01323 Cma-Chr15:8308673 2.61E-08 dispersed
Cma15g01323 Cma-Chr15:8308673 Cma20g00140 Cma-Chr20:678683 0 dispersed
Cma01g00533 Cma-Chr1:2748408 Cma15g01323 Cma-Chr15:8308673 0 transposed
Cma15g01323 Cma-Chr15:8308673 Cma02g00946 Cma-Chr2:5623467 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g257 . . . Bda08g00751 Bpe05g00390 . . . Cmo06g00541 . Cma02g00946 Cma15g01323 Car02g00695 Car15g01188 . . Cpe05g00767 . . . . . . . . . . . . . . . . . . . Csa05g00158 Chy09g01340 . . . . . . . Bma05g00539 Bma12g00420 . Cmo02g00955 Cmo15g01386 Cma06g00538 . Car06g00476 . Cpe08g00954 . Bhi12g00079 . . . . . Lcy12g1510 Cla01g00140 Cam01g0145 . . Clacu01g0140 Cmu01g0140 Cre09g2366 Lsi09g00131 . . Cme09g01887
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005583 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01323 Cma_Chr15 FPKM 14.383822 15.327837 17.445433 17.909914 15.227517 14.304199 15.927986 17.650454 16.403109 18.924772