Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01332 ATGGCGTCCTCCCTCTCCATCTATCATCCATTTTCTTCTAAATTTACTGCTAATTCCAAGCATCTTTCCTCTTCGTTTCTTGCTTCACCCTCTTCAGGGTTCTCTTCAAAGTTCAATTTCTCGCTTCGATTCTTCAGTAATGGCCAATCTTCGTCGCTAATCTCTCCCACTCCAAGGCGCCTCAGTGTTGTCTCAATGGCGCCTCCTAAAGCCAAGCCTGGTGGAAAATCCAAGAAGGTAATTGGGGTGATTAAGCTTGCTCTGGAGGCTGGAAAGGCTACCCCAGCTCCTCCTGTTGGCCCTGCTCTTGGTTCGAAGGGTGTTAATATTATGGCTTTCTGTAAGGATTACAATGCCAAGACAGCCGACAAGGCCGGCTACGTTATTCCTGTTGAAATTACTGTTTACGATGATAAAAGTTTTACTTTCGTGCTCAAGACTCCCCCTGCTTCAGTTCTTCTTCTCAAGGCTGCTGGAGTTGAAAAGGGATCAAAAGATCCACAGGCACAAAAAGTGGGAAAGATAACCATTGAACAGCTGCGTGTGATTGCTGCAGAAAAGTTACCAGATTTGAATTGCACAACCATTGAATCAGCAATGAGGGTCATAGCAGGGACAGCAGCCAATATGGGAATTGAGGTCGATCCTCCTGTTCTTGAACCTAAAAAGAAGGAACTTGTGTAG 684 45.47 MASSLSIYHPFSSKFTANSKHLSSSFLASPSSGFSSKFNFSLRFFSNGQSSSLISPTPRRLSVVSMAPPKAKPGGKSKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPQAQKVGKITIEQLRVIAAEKLPDLNCTTIESAMRVIAGTAANMGIEVDPPVLEPKKKELV 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8354533 8357142 + CmaCh15G013320.1 Cma15g01332 310482

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01332 227 CDD Ribosomal_L11 84 214 IPR000911 GO:0003735|GO:0005840|GO:0006412
Cma15g01332 227 Gene3D - 75 146 IPR036796 -
Cma15g01332 227 Gene3D - 147 227 IPR036769 -
Cma15g01332 227 ProSitePatterns Ribosomal protein L11 signature. 201 215 IPR020785 GO:0003735|GO:0005840|GO:0006412
Cma15g01332 227 PANTHER 60S RIBOSOMAL PROTEIN L12 55 215 IPR000911 GO:0003735|GO:0005840|GO:0006412
Cma15g01332 227 PANTHER RIBOSOMAL PROTEIN L11 55 215 - -
Cma15g01332 227 Hamap 50S ribosomal protein L11 [rplK]. 80 216 IPR000911 GO:0003735|GO:0005840|GO:0006412
Cma15g01332 227 Pfam Ribosomal protein L11, N-terminal domain 84 141 IPR020784 -
Cma15g01332 227 SUPERFAMILY Ribosomal protein L11, C-terminal domain 142 215 IPR036769 -
Cma15g01332 227 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 74 159 IPR036796 -
Cma15g01332 227 TIGRFAM L11_bact: ribosomal protein uL11 78 215 IPR006519 GO:0003735|GO:0005840|GO:0006412
Cma15g01332 227 SMART rl11c 84 215 IPR000911 GO:0003735|GO:0005840|GO:0006412
Cma15g01332 227 Pfam Ribosomal protein L11, RNA binding domain 146 214 IPR020783 GO:0003735|GO:0005840|GO:0006412
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01332 K02867 RP-L11, MRPL11, rplK; large subunit ribosomal protein L11 - csv:101210200 364.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00383 Cma-Chr7:1642446 Cma15g01332 Cma-Chr15:8354533 3.87E-27 dispersed
Cma15g01332 Cma-Chr15:8354533 Cma03g00621 Cma-Chr3:5411073 8.10E-28 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g268 . . . . . . . . . . . Cma15g01332 . Car15g01197 . . . . . . . . . . . . . . . . . . . . . . Csa05g00149 Chy09g01346 . . . . . . . . . . . Cmo15g01394 . . . . . . Bhi12g00069 . . Lac11g1879 Hepe06g1420 . Lcy12g1498 Cla01g00132 Cam01g0134 Cec01g0135 Cco01g0136 Clacu01g0130 Cmu01g0132 Cre09g2373 Lsi09g00123 . . Cme09g01894
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012293 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01332 Cma_Chr15 FPKM 3.43737 4.746887 11.886672 10.519063 200.648819 163.682968 219.124191 8.964597 8.91132 11.339759