Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01333 ATGTCCGCCACCGCCAAGCTGCTTGTCGCCGATCTCGCTTCCACCGTCCACCAACTCCCTTCCCGCTTCGTCCGCCCCATCGACGACCGTCCAAACTTCTCCCATGTTCGAACTCCGACCGGCTACTCTTTCCCTGTCATTGACCTCCACAACCTCCACGGCCTCTCTCGTGCTGATGTCGTCGCCCAAATTGGCCAAGCCTGTGAGCGCGACGGTTTCTTTCTGGTGAAGAACCATGGGGTGCCGGAGGAGTTGATGAATGGGATGCTGAGATTGGCTAGGGAGTTTTTCCGGCTGCCGGAGAGTGAGAGACTTAAGAGCTATTCCGATGATCCGACGAAGACGACGAGGCTTTCGACGAGTTTCAATGTGAAGACGGAGAAGGTGGCAAATTGGAGGGATTTCTTGAGACTCCATTGTTACCCTCTCGAGCTTTATGTCAATGAATGGCCCGAGAATCCTCCATCCTTCAGGAAAGAAGTGGCGGAGTATTGTACAAGAGTGAGGGAATTGACATTAAAGCTATTAGAGGCCATTTCTGAGAGCTTGGGGTTACCAAAAGACTCCATAGCCAATTCAATTGGAGGCCATGGCCAACACATGGCCTTGAACTACTATCCGCCATGTCCACAGCCAGAGCTCACCTATGGCTTACCTGGCCACACCGACCCGAACCTCATCACTCTCCTCCTCCAAGACCAAGTCCCCGGCCTCCAAGCCCTCCACGACAACACTTGGTTCGCTCTCGACCCCATCCCTAACACCTTTATAATCAACATTGGCGATCAAATGCAGGCGTTGAGTAATGACAGATACAAGAGCGTGCTTCATCGAGCTGTTGTGAATAGTGAAACGGAGCGAATTTCAATCCCGACATTTTATTGTCCGTCGCAGGACGCGATGATCGGGCCATTTAAGGAGCTGGCCGACGTCAAGAATAGAGCGGTTTATAGACAATTTTCTTATTCAGAATATTACAAGACGTTTTGGAATGAAGGACTTGCAACCAAAAGATGCTTAGATTTGTTTAGAGAGCTTTCTGAGCTGGTTGAGCTGATGTCGGGCCGCACACTGGCGTCCTCCAACGACCAACTGCCAAGCTTGACATGGGATGACAAGTTGACAGCGTCTGGCTGGAAGACTGGCCAGCTGAGATTTCATTTTAGCTGA 1170 51.2 MSATAKLLVADLASTVHQLPSRFVRPIDDRPNFSHVRTPTGYSFPVIDLHNLHGLSRADVVAQIGQACERDGFFLVKNHGVPEELMNGMLRLAREFFRLPESERLKSYSDDPTKTTRLSTSFNVKTEKVANWRDFLRLHCYPLELYVNEWPENPPSFRKEVAEYCTRVRELTLKLLEAISESLGLPKDSIANSIGGHGQHMALNYYPPCPQPELTYGLPGHTDPNLITLLLQDQVPGLQALHDNTWFALDPIPNTFIINIGDQMQALSNDRYKSVLHRAVVNSETERISIPTFYCPSQDAMIGPFKELADVKNRAVYRQFSYSEYYKTFWNEGLATKRCLDLFRELSELVELMSGRTLASSNDQLPSLTWDDKLTASGWKTGQLRFHFS 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8357978 8360326 - CmaCh15G013330.1 Cma15g01333 310483

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01333 389 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 4 338 - -
Cma15g01333 389 Pfam 2OG-Fe(II) oxygenase superfamily 199 296 IPR044861 -
Cma15g01333 389 SUPERFAMILY Clavaminate synthase-like 13 334 - -
Cma15g01333 389 Pfam non-haem dioxygenase in morphine synthesis N-terminal 45 153 IPR026992 -
Cma15g01333 389 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 197 296 IPR005123 -
Cma15g01333 389 PANTHER PROTEIN DMR6-LIKE OXYGENASE 2-LIKE 4 338 - -
Cma15g01333 389 Gene3D - 7 333 IPR027443 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01333 K24028 DMR6, DLO; salicylic acid 3-hydroxylase [EC:1.14.11.-] - csv:101209949 567.385
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma15g01333 Cma16g01237 CCT
Cma15g01333 Cma16g01237 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00579 Cma-Chr6:2787699 Cma15g01333 Cma-Chr15:8357978 5.14E-66 dispersed
Cma14g01630 Cma-Chr14:12197296 Cma15g01333 Cma-Chr15:8357978 7.21E-68 dispersed
Cma14g01803 Cma-Chr14:12961404 Cma15g01333 Cma-Chr15:8357978 2.50E-56 dispersed
Cma15g01333 Cma-Chr15:8357978 Cma16g00015 Cma-Chr16:87066 1.14E-127 dispersed
Cma16g00267 Cma-Chr16:1257889 Cma15g01333 Cma-Chr15:8357978 5.80E-59 dispersed
Cma15g01333 Cma-Chr15:8357978 Cma14g00248 Cma-Chr14:1082343 1.15E-73 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g274 . . Bda06g01126 . . . . . . Cmo16g01283 . Cma15g01333 . Car15g01198 . . . . . . . . . . . . . . . . . . . . . Lsi07g01105 . . . Blo03g00789 . . . . Bpe11g00380 . . . . Cmo15g01395 . Cma16g01237 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007284 0 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 3 2 1 1 1 1 3 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01333 Cma_Chr15 FPKM 2.016787 1.538574 0.0 0.0 11.194596 11.008169 9.651515 0.785858 0.88649 0.675601