Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01340 ATGAATTTTGGACTGAATAGACTCCAAAATCACGATTTAGAACCCAGAAATAGGCTCGATTTGACGATGTTGGAGCCGCCGGAGCCGGAAGAGGAAGCTGCTAGTTCTACGGCGGTGGGGTCCGACGGTGGCGATGGAGGAGTTGAGAAGGAACACATGTTCAACAAAGTGGTGACGCCGAGTGATGTGGGAAAATTGAACCGGCTAGTGATTCCAAAGCAACACGCTGAGAGATTTTTCCCCTTAGATTCATCAACAAACGACAAGGGTTTGCTCTTAAATTTCGAAGATCGCAACGGCAAATCGTGGCGGTTCCGTTACTCCTACTGGAACAGTAGCCAAAGCTACGTTATGACCAAAGGCTGGAGTCGCTTCGTCAAAGAGAAGCGCCTCGACGCCGGTGATACAGTTTCCTTCCAACGTGGGGTTGGTGAAATTGGAAGAGATCGTCTTTACATTGACTGCCGCCGCCGCCATGAACTTCCCATTCACCACCACTCTCCCACCACAGTCAGCATCCGACCAAGCATCGTCGTCCCAGCCAGCGCCACCGCTTGGGGGCCATTCATGTGGCAGCCACTCAGCGCCACAACACCTGGATACCTCCCCCATCTGCGAGATCCCACATCGAATAGAGAATGTTGTCCGTATTCAGACGGGAGTGTTGAAACATCTGGAATGATGTTTTTGAGGACAGAGGGAAGAAGGGTAGCCCCAAGATTAGGAGATCAGAGGGAGGTGGAGGTGGAGCCGAGTGGCGGCGGCGGTGGTTCAATGACGGCGGTTCAAGATACTCCAGTGAAGAGATCAAGACTGAGGCTGTTTGGTGTAAACATGGAGATGGAGGATCCAATTTCATTGACTTCTGATGAATGCGAATTATTATTGTTTTCTTCAAATTCAAACCCCAAATTGGCTTCCTCCTCTTCAAATTACGAGTAA 942 50.21 MNFGLNRLQNHDLEPRNRLDLTMLEPPEPEEEAASSTAVGSDGGDGGVEKEHMFNKVVTPSDVGKLNRLVIPKQHAERFFPLDSSTNDKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFQRGVGEIGRDRLYIDCRRRHELPIHHHSPTTVSIRPSIVVPASATAWGPFMWQPLSATTPGYLPHLRDPTSNRECCPYSDGSVETSGMMFLRTEGRRVAPRLGDQREVEVEPSGGGGGSMTAVQDTPVKRSRLRLFGVNMEMEDPISLTSDECELLLFSSNSNPKLASSSSNYE 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8405825 8406766 - CmaCh15G013400.1 Cma15g01340 310490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01340 313 SUPERFAMILY DNA-binding pseudobarrel domain 51 160 IPR015300 -
Cma15g01340 313 Gene3D - 48 168 IPR015300 -
Cma15g01340 313 SMART B3_2 54 159 IPR003340 GO:0003677
Cma15g01340 313 MobiDBLite consensus disorder prediction 241 265 - -
Cma15g01340 313 CDD B3_DNA 52 141 IPR003340 GO:0003677
Cma15g01340 313 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 37 291 IPR044800 GO:0003700
Cma15g01340 313 MobiDBLite consensus disorder prediction 27 49 - -
Cma15g01340 313 ProSiteProfiles B3 DNA-binding domain profile. 54 159 IPR003340 GO:0003677
Cma15g01340 313 Pfam B3 DNA binding domain 54 158 IPR003340 GO:0003677
Cma15g01340 313 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 37 291 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00739 Cma-Chr4:3757346 Cma15g01340 Cma-Chr15:8405825 6.85E-69 dispersed
Cma15g01340 Cma-Chr15:8405825 Cma16g00597 Cma-Chr16:3085688 2.04E-60 dispersed
Cma17g00554 Cma-Chr17:4493889 Cma15g01340 Cma-Chr15:8405825 4.31E-68 transposed
Cma15g01340 Cma-Chr15:8405825 Cma02g00959 Cma-Chr2:5702087 8.60E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36485 PF02362 B3 3.00E-28 CL0405 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01340 - - cpep:111783957 572.392