Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma15g01340 | ATGAATTTTGGACTGAATAGACTCCAAAATCACGATTTAGAACCCAGAAATAGGCTCGATTTGACGATGTTGGAGCCGCCGGAGCCGGAAGAGGAAGCTGCTAGTTCTACGGCGGTGGGGTCCGACGGTGGCGATGGAGGAGTTGAGAAGGAACACATGTTCAACAAAGTGGTGACGCCGAGTGATGTGGGAAAATTGAACCGGCTAGTGATTCCAAAGCAACACGCTGAGAGATTTTTCCCCTTAGATTCATCAACAAACGACAAGGGTTTGCTCTTAAATTTCGAAGATCGCAACGGCAAATCGTGGCGGTTCCGTTACTCCTACTGGAACAGTAGCCAAAGCTACGTTATGACCAAAGGCTGGAGTCGCTTCGTCAAAGAGAAGCGCCTCGACGCCGGTGATACAGTTTCCTTCCAACGTGGGGTTGGTGAAATTGGAAGAGATCGTCTTTACATTGACTGCCGCCGCCGCCATGAACTTCCCATTCACCACCACTCTCCCACCACAGTCAGCATCCGACCAAGCATCGTCGTCCCAGCCAGCGCCACCGCTTGGGGGCCATTCATGTGGCAGCCACTCAGCGCCACAACACCTGGATACCTCCCCCATCTGCGAGATCCCACATCGAATAGAGAATGTTGTCCGTATTCAGACGGGAGTGTTGAAACATCTGGAATGATGTTTTTGAGGACAGAGGGAAGAAGGGTAGCCCCAAGATTAGGAGATCAGAGGGAGGTGGAGGTGGAGCCGAGTGGCGGCGGCGGTGGTTCAATGACGGCGGTTCAAGATACTCCAGTGAAGAGATCAAGACTGAGGCTGTTTGGTGTAAACATGGAGATGGAGGATCCAATTTCATTGACTTCTGATGAATGCGAATTATTATTGTTTTCTTCAAATTCAAACCCCAAATTGGCTTCCTCCTCTTCAAATTACGAGTAA | 942 | 50.21 | MNFGLNRLQNHDLEPRNRLDLTMLEPPEPEEEAASSTAVGSDGGDGGVEKEHMFNKVVTPSDVGKLNRLVIPKQHAERFFPLDSSTNDKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFQRGVGEIGRDRLYIDCRRRHELPIHHHSPTTVSIRPSIVVPASATAWGPFMWQPLSATTPGYLPHLRDPTSNRECCPYSDGSVETSGMMFLRTEGRRVAPRLGDQREVEVEPSGGGGGSMTAVQDTPVKRSRLRLFGVNMEMEDPISLTSDECELLLFSSNSNPKLASSSSNYE | 313 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 8405825 | 8406766 | - | CmaCh15G013400.1 | Cma15g01340 | 310490 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma15g01340 | 313 | SUPERFAMILY | DNA-binding pseudobarrel domain | 51 | 160 | IPR015300 | - | |
Cma15g01340 | 313 | Gene3D | - | 48 | 168 | IPR015300 | - | |
Cma15g01340 | 313 | SMART | B3_2 | 54 | 159 | IPR003340 | GO:0003677 | |
Cma15g01340 | 313 | MobiDBLite | consensus disorder prediction | 241 | 265 | - | - | |
Cma15g01340 | 313 | CDD | B3_DNA | 52 | 141 | IPR003340 | GO:0003677 | |
Cma15g01340 | 313 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 37 | 291 | IPR044800 | GO:0003700 | |
Cma15g01340 | 313 | MobiDBLite | consensus disorder prediction | 27 | 49 | - | - | |
Cma15g01340 | 313 | ProSiteProfiles | B3 DNA-binding domain profile. | 54 | 159 | IPR003340 | GO:0003677 | |
Cma15g01340 | 313 | Pfam | B3 DNA binding domain | 54 | 158 | IPR003340 | GO:0003677 | |
Cma15g01340 | 313 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 | 37 | 291 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g00739 | Cma-Chr4:3757346 | Cma15g01340 | Cma-Chr15:8405825 | 6.85E-69 | dispersed | |
Cma15g01340 | Cma-Chr15:8405825 | Cma16g00597 | Cma-Chr16:3085688 | 2.04E-60 | dispersed | |
Cma17g00554 | Cma-Chr17:4493889 | Cma15g01340 | Cma-Chr15:8405825 | 4.31E-68 | transposed | |
Cma15g01340 | Cma-Chr15:8405825 | Cma02g00959 | Cma-Chr2:5702087 | 8.60E-112 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36485 | PF02362 | B3 | 3.00E-28 | CL0405 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma15g01340 | - | - | cpep:111783957 | 572.392 |