Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01342 ATGGCGAAGCTGTATGCGTCGTGTGCTGCAATGGTGGCGGTGCAAATTGGGTATGGCGGATCCAACATTCTGATGAAAGTGGCTAGCGAGAAGGATCTTGATCCTTTCGTGTTCTTCGTGTATCGCCATATCATCGCCTTCCTCGTCTTGCTTCCTTTCGCTTATGTCATCGATAGAAACAAACAGACTTCTTTGACGATTTCCACGACCATTAAGATCTTCTTGCTAGCCATTTTAGGGTCAACTACTTACTTGAATCTTTTCTACCTTGGAATTAAGTATACTTCAGCCACCGTGGCTTCCGCTTTCAGTAATGTCACTCCCAGCTTCACTTTTGTCATGGCAGTTTTGTTCAGATTGGAGAAAGTGAATATCAAAACTGCAAGAGGTGCTGCTAAAGTGTTGGGGACGGTGATCTGCATTGGCGGTTCCCTTATTTTCACGTTCTGGAAAGGACCGTACTTAACCAAAGCCATCTTCAAGGAGCCGCTCATAAACATATACAAGAATCAGGACTCTGGGAATAGCAGCGGCAAGGATTGGATCAAGGGCTCAGCTTTTATTGTTCTAAGTGAGATGTCTTGGAGTGCATGGCTAATTCTACAGACATTTGTCACCAGAAAATACCCAGCTAAATTGACCATTACTGTTCTAACTTGCGTGTTTGCAACTGCACAATCTGGCTTCCTTGCCTTGTTCTTTGCCAGAGATCCAGAAAAATGGAAGCTGCACTGGGATGCACGGTTGTTAACCATCGTATACAGTGGCATTATTATTTCCGCCGTGGGGTATTTTGTACAAACCTGGGTCATCAGCCACAATGGGCCAGTTTTTACTTCAATATTTAACCCCCTAATGCTGATATTTGTGGCCATATTCTCAGCATTTGTGTTCTCAGAGCGGCTTCATGTGGGCAGCCTGGTGGGAGCTTTCTTTATCGTATTGGGTCTGTATTTGGTGCTGTGGGGGAAGAAGGCAGATCATGTGGTGGCGGATGAACAGCAGGAGAAGGAAAAGGTGTTCGTTGACACTGAAATGCAGAGTACGTCTGTAAATGATAATGAAGTGAAAGATAGTGTAAGAGAAACGAGAATTTCTCGGATTGGAGCTGCAAACGTTGCAAGTTAA 1128 44.59 MAKLYASCAAMVAVQIGYGGSNILMKVASEKDLDPFVFFVYRHIIAFLVLLPFAYVIDRNKQTSLTISTTIKIFLLAILGSTTYLNLFYLGIKYTSATVASAFSNVTPSFTFVMAVLFRLEKVNIKTARGAAKVLGTVICIGGSLIFTFWKGPYLTKAIFKEPLINIYKNQDSGNSSGKDWIKGSAFIVLSEMSWSAWLILQTFVTRKYPAKLTITVLTCVFATAQSGFLALFFARDPEKWKLHWDARLLTIVYSGIIISAVGYFVQTWVISHNGPVFTSIFNPLMLIFVAIFSAFVFSERLHVGSLVGAFFIVLGLYLVLWGKKADHVVADEQQEKEKVFVDTEMQSTSVNDNEVKDSVRETRISRIGAANVAS 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8415672 8418268 + CmaCh15G013420.1 Cma15g01342 310492

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01342 375 Pfam EamA-like transporter family 183 321 IPR000620 GO:0016020|GO:0016021
Cma15g01342 375 Pfam EamA-like transporter family 11 140 IPR000620 GO:0016020|GO:0016021
Cma15g01342 375 SUPERFAMILY Multidrug resistance efflux transporter EmrE 41 141 - -
Cma15g01342 375 SUPERFAMILY Multidrug resistance efflux transporter EmrE 229 325 - -
Cma15g01342 375 PANTHER WAT1-RELATED PROTEIN 7 339 IPR030184 GO:0016021|GO:0022857
Cma15g01342 375 PANTHER WAT1-RELATED PROTEIN 7 339 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01342 - - - cmax:111469060 736.487
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00275 Cma-Chr5:1163426 Cma15g01342 Cma-Chr15:8415672 6.60E-82 dispersed
Cma07g00780 Cma-Chr7:3528513 Cma15g01342 Cma-Chr15:8415672 1.40E-71 dispersed
Cma12g00435 Cma-Chr12:2275723 Cma15g01342 Cma-Chr15:8415672 1.83E-82 dispersed
Cma12g00827 Cma-Chr12:6097076 Cma15g01342 Cma-Chr15:8415672 7.10E-71 dispersed
Cma15g01342 Cma-Chr15:8415672 Cma09g00799 Cma-Chr9:3899192 8.57E-90 dispersed
Cma16g00009 Cma-Chr16:62318 Cma15g01342 Cma-Chr15:8415672 4.15E-67 dispersed
Cma15g01342 Cma-Chr15:8415672 Cma15g01343 Cma-Chr15:8423171 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g289 . . . . . . . . . . . Cma15g01342 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda07g00165 . . . . . . . Cmo15g01404 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012233 3 0 0 1 0 0 4 0 0 0 0 0 2 0 0 3 0 0 0 0 0 0 3 1 2 1 0 2 1 4 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01342 Cma_Chr15 FPKM 3.224269 4.470083 2.664488 2.552488 0.560065 0.0 0.0 0.0 0.388723 0.239749