Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01345 ATGGCGAAGGAGTATAGTGGCTCACCGAAGCATCACCATATCGAGTCGAGAAGGAAGCGGTTGACATGGATTCTCGGCGTCAGTGGGCTATGCATTTTATCATACATCTTTGGGGCATGGCAGAACACCACGACACCGATCAACCAATCCGAAGCATATTCCAAAGTCGGTTGCACGGATCAAACATTCCCGTCATCCCAATCCTCTTCATCAACAAATACGCTCGATTTCGAGAGCCACCATGGCGTCGAAATCAACAATTCCATTGAAGCGGTCACCAAGAAGATCTCCCCCTGCGATATGAAGTTCAGCGAATACACTCCCTGTCAAGATCCGACTAGGGCAAGGAAATTCGATCGGAGAATGTTGAAATACAGAGAGCGCCATTGTCCTCCCAAGGAAGAATTGCTCCTCTGTATGATTCCGGCGCCGCCGAAGTACAAGACGCCGTTCAAATGGCCACAGAGCCGCGATTATGCATGGTACGATAACATTCCTCACAGAGAACTTAGCATCGAGAAGGCGGTGCAGAATTGGATTCAGGTTGAAGGCGATCGTTTCCGATTTCCCGGCGGTGGCACGATGTTCCCCCGCGGTGCCAATGCTTATATAGACGACATTAACGAACTTATTCCTCTTACTACAGGGAAGATTCGAACCGCCATTGATACGGGTTGTGGCGTAGCAAGTTGGGGCGCTTACTTGCTGAAGAGGGACATCTTGGCCATGTCCTTTGCCCCAAGGGATACTCATGAAGCTCAAGTTCAGTTCGCTCTAGAGCGTGGCGTTCCAGCCATGATCGGTGTCTTGGCCTCTCAACGACTCCCTTACCCGGCCCGGGCCTTCGACATGGCTCATTGCTCTCGTTGTCTCATCCCGTGGGCCGATAATGATGGGTTGTACTTAATTGAGCTCGATCGAGTTTTGAGGCCGGGCGGGTATTGGATTCTCTCGGGCCCTCCGATTCGTTGGAAGAAGTATTGGAGAGGTTGGGCAAGAACACAAGAGGATTTGAAACAAGAGCAAGACTCCATTGAAGAAGTAGCCAGGAGCCTATGCTGGAAGAAAGTGGTTGAGAAGAATGATCTTGCAATATGGCAAAAGCCCCTCAACCACATCCAATGCATCAAGAACAAGAAAGTCTACAAAACACCCCACATTTGCAAGTCAGACGATCCCGATTCAGCCTGGTATCGAAACTTGGAGACCTGCATAACTCCATTACCAGAGGTAAGTGGCGACAACGAAGTTGCCGGTGGTGCGGTGGAGAATTGGCCGAACCGCGCATTTGTCGTACCACCTCGAATAAGTAGAGGAACAATACCAAACGTGAACAAGGAAAAATTCGAAGAAGATAACAAACTATGGAACGAGAAAATTACATATTACGGAAAGATGATCCCGTTAGAGCATGGACGATACCGAAACATAATGGACATGAATGCAAATCTAGGCGGATTTGCAGCAGCTTTGTTGAAGTTTCCGGTGTGGGTTATGAACGTCGTCCCAGCCAATTCAGACCGTGACAGTTTGGGAGTAATATACGAACGCGGCCTAATCGGAACGTACCATGATTGGTGCGAGGCCTTCTCGACGTACCCGAGAACGTACGATCTAATCCATGCCGATGGCATATTCAGCATATATCAAGATAGGTGTGATATAACTTACATTTTACTGGAGATGGATAGGATATTGAGGCCTGAAGGGACAGTAATTTTCAGGGATACAGTGGAAGTGTTGGTGAAAGTTCAAGCCATTTCAGATGGGATGAAGTGGAAGAGCCAAATTATGGACCATGAAACTGGACCATTCAATCCTGAGAAGATTCTTGTCGCAAAGAAAGGCCCATCTCTCTATACTTGGCTACTCAAGCGGTGGTGTTCGAGATTCGCCTTCTTGTCCTCTTCTAACATTGGGGACTTGCAGCCTCAACAAAGATCGAGTTCACCATCATCTCAAGGGCGGAGAGATATGGTGGAGACCGAGAACATAACCGATTCGTTGCAGAATGTGGAGGATGAAGTTGGGAAAGTGGTGGAGCAAGCGAAGGAGCTGCATGATTCGGCTGCTTCTCTAATCTCTAGAACAGCCACCGACGAACAGGCCCTCCGCCAAAGTGCTCTCTCTCTTGAGTCTTCCATTCGCCGTCTTCGTTCTTTACTCAATTCGCTTATCTCCAAGGAGCTTTTGGATACCAAACTTGCTGACAAGCTGGAAGATGACTTGCAGAGAGCTAGATGTATGATGGCCGATGGAGAGGTTGCATCGTTTCTTCCTGGGAAGCCGCAGGGTAAGTTCTTGCAGATGTTTCTGGGACCTATTAATGTGCGTGCCTCACGGAAAGATGTTCAGTTTAAAGTTAAAGAGGAGTATAACAGTTACAGAGATAGGACTGCTCTTCTCTTTCTTTTTTTCCCATCTCTGCTGCTTGTTCTAAGAGGCTGGGTTTGGGATGGATGCTTGCCTACATTTCCAGTTCAACTGTACCAGGCATGGCTCCTGTTCCTATACACAGGATTGTCTTTGCGTGAAAACATACTAAGAGTCAATGGAAGTGATATTCGTTCTTGGTGGATATACCATCACTATTGTGCTATGATTATGGCCCTTGTTAGTCTTACGTGGGAGATCAAAGGACAGCCAAATTGTGCCCAAAAGCAGAGAGGTGTACAACTCTTCCTACAGTGGGCCATGATGCAAGGAGTTGCAATGCTTTTACAAAATAGATATCAGCGTCAGAGGCTTTATACTCGGATTGCTCTTGGAAAGGCTAAGAGAATGGATGTCGTTTGGGGAGAAACAGCTGGTGTGGATGGTCAACTATTGATACTGTGTCCTTTACTCTTTATCTTACAGGGCTTTGAGGCATATGTTGGATTACTTCTCCTCAAGACTGCATTGGTTGGCGTGGTTCCTGAGTGGCAGGTGTTATTTTGTGGATTCCTTCTGGTTGTAATGGCGGTCGGGAACTTCTCAAATACAGTGCAAACCTTAATGTTCTTAATGCTTAGGATTACTTGTATTAACTTGTTGGATCTATTCTTCACCTTTCCAGATCTTGGATTTGTTTTCGTCAAAGCTGACCTGTTCTTCCCTGGAGAAGTTGATGGACGTGCTACTAAACGCAAGGCTCATTTTCCTGTTACCCATGTAACATTCTTCTCTTTTCTATTGCAGTTCATTGCAAGCTAG 3195 46.92 MAKEYSGSPKHHHIESRRKRLTWILGVSGLCILSYIFGAWQNTTTPINQSEAYSKVGCTDQTFPSSQSSSSTNTLDFESHHGVEINNSIEAVTKKISPCDMKFSEYTPCQDPTRARKFDRRMLKYRERHCPPKEELLLCMIPAPPKYKTPFKWPQSRDYAWYDNIPHRELSIEKAVQNWIQVEGDRFRFPGGGTMFPRGANAYIDDINELIPLTTGKIRTAIDTGCGVASWGAYLLKRDILAMSFAPRDTHEAQVQFALERGVPAMIGVLASQRLPYPARAFDMAHCSRCLIPWADNDGLYLIELDRVLRPGGYWILSGPPIRWKKYWRGWARTQEDLKQEQDSIEEVARSLCWKKVVEKNDLAIWQKPLNHIQCIKNKKVYKTPHICKSDDPDSAWYRNLETCITPLPEVSGDNEVAGGAVENWPNRAFVVPPRISRGTIPNVNKEKFEEDNKLWNEKITYYGKMIPLEHGRYRNIMDMNANLGGFAAALLKFPVWVMNVVPANSDRDSLGVIYERGLIGTYHDWCEAFSTYPRTYDLIHADGIFSIYQDRCDITYILLEMDRILRPEGTVIFRDTVEVLVKVQAISDGMKWKSQIMDHETGPFNPEKILVAKKGPSLYTWLLKRWCSRFAFLSSSNIGDLQPQQRSSSPSSQGRRDMVETENITDSLQNVEDEVGKVVEQAKELHDSAASLISRTATDEQALRQSALSLESSIRRLRSLLNSLISKELLDTKLADKLEDDLQRARCMMADGEVASFLPGKPQGKFLQMFLGPINVRASRKDVQFKVKEEYNSYRDRTALLFLFFPSLLLVLRGWVWDGCLPTFPVQLYQAWLLFLYTGLSLRENILRVNGSDIRSWWIYHHYCAMIMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLLILCPLLFILQGFEAYVGLLLLKTALVGVVPEWQVLFCGFLLVVMAVGNFSNTVQTLMFLMLRITCINLLDLFFTFPDLGFVFVKADLFFPGEVDGRATKRKAHFPVTHVTFFSFLLQFIAS 1064
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8438088 8449235 + CmaCh15G013450.1 Cma15g01345 310495

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01345 1064 MobiDBLite consensus disorder prediction 640 659 - -
Cma15g01345 1064 Pfam TMPIT-like protein 666 1000 IPR012926 GO:0016021
Cma15g01345 1064 PANTHER METHYLTRANSFERASE PMT18-RELATED 13 616 - -
Cma15g01345 1064 Gene3D Vaccinia Virus protein VP39 193 366 IPR029063 -
Cma15g01345 1064 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 470 577 IPR029063 -
Cma15g01345 1064 Coils Coil 669 689 - -
Cma15g01345 1064 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 13 616 IPR004159 GO:0008168
Cma15g01345 1064 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 127 333 IPR029063 -
Cma15g01345 1064 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 105 615 IPR004159 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01345 - - - csv:101211919 1174.84
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00967 Cma15g01345 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00840 Cma-Chr6:4629797 Cma15g01345 Cma-Chr15:8438088 0 dispersed
Cma14g02009 Cma-Chr14:14077083 Cma15g01345 Cma-Chr15:8438088 0 dispersed
Cma15g01345 Cma-Chr15:8438088 Cma16g00143 Cma-Chr16:629275 0 dispersed
Cma19g00193 Cma-Chr19:1294351 Cma15g01345 Cma-Chr15:8438088 3.43E-173 dispersed
Cma02g00968 Cma-Chr2:5773819 Cma15g01345 Cma-Chr15:8438088 0 transposed
Cma15g01345 Cma-Chr15:8438088 Cma02g00967 Cma-Chr2:5767672 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g294 . . . . . . Bma07g01053 . . Cmo16g01132 Cma02g00967 Cma15g01345 Car02g00713 Car15g01212 . . Cpe05g00750 . . . . . . . . . . . . . . . . . . . Csa05g00134 Chy09g01360 . Blo03g00783 Blo19g00119 Bda07g00168 Bda09g00622 Bpe08g00920 Bpe11g00386 . . . Cmo02g00973 Cmo15g01407 . . . . . . Bhi12g00051 . . Lac11g1820 . . Lcy12g1457 Cla01g00118 Cam01g0120 Cec01g0120 Cco01g0121 Clacu01g0117 Cmu01g0118 Cre09g2387 Lsi09g00106 . . Cme09g01906
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004844 3 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 4 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01345 Cma_Chr15 FPKM 5.941221 5.863793 7.59963 7.502975 5.125459 5.977334 6.600747 8.672387 8.749267 9.426414