Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01346 ATGCAAGGCCACGCCGACACCGGCATTGAACGTCTGCTGTCTACTGCTTCTGTTTCTCTCTCTTCCTTTTCAATTAATCGTCCCTTTTTCTCTCTCCTCCTCCATTTCTTCATTCCTTTCTTCTTCCTTTTCTGGAATTTCAACTCTCCAATTCACTGTTCTGTTTTGATTTTACTTGGAATAACACGGCGGTGGGTTTTGGGATTCCGACGGTTTTCGCCGGAGTTAATGGAAGGGGTTGGAGGTGGGTCGGGATCGGAATTGTTTGGAGTTACGCCGCCGTTGACTGTCGAGGCTGTAAGTGATTCTCAGCCAGTGGAAGCTGCTTCTCCGATTAGTAGTCGACCTCCTGCATCGTCTTCGTTGAATTATGAGGAACTCATTCGCGGTGGAGGACAGATGGCGATTGACGACGACGCGCTAGTCGGAGAAGATGCAGGCGGCGGTGGTGGCTCTTCTGGGAATCGTTGGCCTCGTCAAGAAACTCTTGCGTTGCTTAAAATTAGATCGGATATGGATTCTGCCTTCCGTGATGCTACACTTAAAGGACCTCTCTGGGACGAAGTCTCCAGTTGCACGAGAGTCATTTTGAATTCGGTTGGAGTAGTGATTGCTAACCGTTTTGAAATGGGTTGGGTTGGATTGAATTACAGGAAGCTCGGAGAAATGGGTTATGTCAGAAATGCGAAGAAATGCAAAGAGAAATTTGAGAATGTACAGAAATATTACAAGCGCACAAAGGAAGGGCGAGGAGGGCGTGGAGATGGGAAGACGTACAAATTCTTCACGCAGCTTGAGGCGCTACACAACGCCGCATCTCAAAACGTGGCGGCATCGGGCTTCGGGATTAGCAACCCAACTCCAATCTCAGCCGTCAAAATCTCACAAACCCCAATGGGAATCTTTTCTCCGCCGCCCACCATCGCCGCTCCAATGGGTGTCAGCTTTTCATCCTACACGTCATCTTCATCAACAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGATGGGTTTTGATGTTGAAGGAGAGCCGTCGAGTGTGGCGGGAAGTAGCCGGAAGCGGCGGCGGAGAGCGGCGATTAAGGGAAAAAGTGGTGGCCGGACGAGAAGCCATAAGATGATGATGGGGTTTTTTGAGGGTTTGATGAAGGAAGTGCTGCAGAAACAGGAAGCTATGCAACAGAGATTCCTGGAGGCGATTGAGAGAAGAGAAGAAGAGAGAATGATGAGAGAAGAGACATGGAAGAGGCAAGAAATGGGGAGATTAAGGGAGGAGCAAGAAAAAATGGCTCAAGAACGGACAATTTCTGGGTCTAGAGATGCGGCCATAATTGCTTTTCTTCAGAAATTCACAGGCCAAACCATTCAATTACCGTCAGTGAATATCTCTCCTTCAGCCCCACAACAACACTATGATCTGTCAGTGCCTGTCCCTGCGCCCACGCCTGTCGCTATGCCACTATCCCCTGTCCCCCCGCCTCCGCCATTGAAAACCCAGCCGCCTCCAAATACAATGCCATTTTTGGATCACCCAATATCATTAACAAATCAGGAAAGCAGCCATGGCGGCCGAGGAGATGGCCCTTCAGAACCCATTTCTTCAAGATGGCCTAAACCGGAAGTTCTAGCGCTAATTAAGCTGAGAGGTGGGCTTGAATCAAGATATCAAGAAATGGGTCCTAAGGGCCCTCTTTGGGAAGAGATTTCAGCTGGAATGAACCGATTGGGTTACAAAAGAAGCGCCAAAAGATGCAAGGAAAAATGGGAGAATATCAACAAATACTTCAAGAAAGTTAAAGAAAGCAACAAAAAACGCCGCGAGGATTCCAAAACTTGCCCCTATTTCGATGAACTCGACGCTCTTTACCGGAAAAAGATCCCCGCTGCCGGGGGTTCTGACGGTGGCGGCTCCTTTTGCGACACCGCCAAATTAGAACAAACCCACATCGAAATGCCTCATACCACACCCGCTGAAGAACAACCACCACCACCACCACCACCGCCGCCGCCGCCGCCGCCGTCACCACCACCCACAAAGCCAGAAGACATTGTGAGTGAGTTGATGGAGCTTCAGAACCTTTACGATGTCGATCAAGTCGACGATGAGGACGATGACGACGACGACGACAACGACAACACCCGAGAAGAAAAGAGGAGGAACATGGATTACAAAATGGAGTTTCAGACAAGTGAGTTTCAATCAATGGCGGTGGTTCAATAA 2220 49.46 MQGHADTGIERLLSTASVSLSSFSINRPFFSLLLHFFIPFFFLFWNFNSPIHCSVLILLGITRRWVLGFRRFSPELMEGVGGGSGSELFGVTPPLTVEAVSDSQPVEAASPISSRPPASSSLNYEELIRGGGQMAIDDDALVGEDAGGGGGSSGNRWPRQETLALLKIRSDMDSAFRDATLKGPLWDEVSSCTRVILNSVGVVIANRFEMGWVGLNYRKLGEMGYVRNAKKCKEKFENVQKYYKRTKEGRGGRGDGKTYKFFTQLEALHNAASQNVAASGFGISNPTPISAVKISQTPMGIFSPPPTIAAPMGVSFSSYTSSSSTEEEEEEEEEEMGFDVEGEPSSVAGSSRKRRRRAAIKGKSGGRTRSHKMMMGFFEGLMKEVLQKQEAMQQRFLEAIERREEERMMREETWKRQEMGRLREEQEKMAQERTISGSRDAAIIAFLQKFTGQTIQLPSVNISPSAPQQHYDLSVPVPAPTPVAMPLSPVPPPPPLKTQPPPNTMPFLDHPISLTNQESSHGGRGDGPSEPISSRWPKPEVLALIKLRGGLESRYQEMGPKGPLWEEISAGMNRLGYKRSAKRCKEKWENINKYFKKVKESNKKRREDSKTCPYFDELDALYRKKIPAAGGSDGGGSFCDTAKLEQTHIEMPHTTPAEEQPPPPPPPPPPPPPSPPPTKPEDIVSELMELQNLYDVDQVDDEDDDDDDDNDNTREEKRRNMDYKMEFQTSEFQSMAVVQ 739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8453337 8457364 - CmaCh15G013460.1 Cma15g01346 310496

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01346 739 MobiDBLite consensus disorder prediction 351 368 - -
Cma15g01346 739 PANTHER - 218 713 - -
Cma15g01346 739 PANTHER - 131 190 - -
Cma15g01346 739 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 218 713 - -
Cma15g01346 739 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 131 190 - -
Cma15g01346 739 MobiDBLite consensus disorder prediction 695 711 - -
Cma15g01346 739 MobiDBLite consensus disorder prediction 488 535 - -
Cma15g01346 739 CDD GT1 534 599 - -
Cma15g01346 739 MobiDBLite consensus disorder prediction 656 680 - -
Cma15g01346 739 Coils Coil 386 406 - -
Cma15g01346 739 ProSiteProfiles Myb-like domain profile. 534 592 IPR001005 -
Cma15g01346 739 MobiDBLite consensus disorder prediction 317 371 - -
Cma15g01346 739 Pfam Myb/SANT-like DNA-binding domain 534 621 IPR044822 -
Cma15g01346 739 Pfam Myb/SANT-like DNA-binding domain 155 268 IPR044822 -
Cma15g01346 739 MobiDBLite consensus disorder prediction 509 523 - -
Cma15g01346 739 Gene3D - 157 245 - -
Cma15g01346 739 Gene3D - 536 597 - -
Cma15g01346 739 MobiDBLite consensus disorder prediction 652 739 - -
Cma15g01346 739 MobiDBLite consensus disorder prediction 488 507 - -
Cma15g01346 739 CDD GT1 155 247 - -
Cma15g01346 739 MobiDBLite consensus disorder prediction 324 340 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01346 - - - cmos:111435698 957.207
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g00453 Cma15g01346 CCT
Cma02g00969 Cma15g01346 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00071 Cma-Chr10:273170 Cma15g01346 Cma-Chr15:8453337 1.42E-09 dispersed
Cma13g00388 Cma-Chr13:4468626 Cma15g01346 Cma-Chr15:8453337 1.16E-13 dispersed
Cma15g01346 Cma-Chr15:8453337 Cma20g01075 Cma-Chr20:8150436 2.46E-17 dispersed
Cma15g01346 Cma-Chr15:8453337 Cma02g00969 Cma-Chr2:5785720 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g296 . . . . . . . . . . Cma02g00969 Cma15g01346 Car02g00715 Car15g01214 . . Cpe05g00748 . . . . . . . . . . . . . . Cone8ag0572 Cone12ag0575 . . . Csa05g00132 Chy09g01362 . . . . . . . . . . Cmo02g00975 Cmo15g01408 Cma06g00453 . . . . . Bhi12g00049 . . Lac11g1813 . . . Cla01g00116 Cam01g0118 Cec01g0118 Cco01g0119 Clacu01g0115 Cmu01g0116 Cre09g2389 Lsi09g00104 . . Cme09g01908
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006703 0 4 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 5 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36487 PF13837 Myb_DNA-bind_4 1.10E-12 CL0123 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01346 Cma_Chr15 FPKM 25.702551 29.800142 12.292511 14.290556 5.226859 3.736093 5.08074 0.793888 0.669103 0.54978