Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01347 ATGGGTTTGCTTCGGTTCTTTAGAGTGAAGAGGAAATCGAAAGTTGCTGATAAAAAAACCGTTCTTGATGCTGAAATTCAGCCTGGTTTTGGTGCTAGGAAGTTCCGGTGGACTGAAATCGAGGCTTTTACTAAGAATTTCTCCACTGTTGTCGGCTCCGGCGGCTTCAGTAACGTCTATCTTGCTCGGACGGCGCCGGGGATTCCGGCGGCGGTTAAGATTTTGGGTGCTAGTGAGCGGCTCAACCGGATGTTCCGGCAGGAATTGGACATTCTTCTGCAGCTCCGCCACCGGAATATTGTCACTTTCCTTGGCTATTGCGATGAACGAGATGAAGGAGCTTTGGTCTTCGAATATGTCTCCAATGGGAGCTTGCAAGAGAAGCTCCACAACCGGCCGGCGGCGGTGGTGAAGACAGCGGTGCCGGTTCTTCCATGGAAAATCCGATTAGCCATAGCCTTTCAGTTAGCTCAAGCAATCGAATACCTCCATGAAAAATGCAGTCTACAAATCGTTCACGGCGATATAAAATCATCGAATATTTTACTGGACGAGCGATTCAATTGCAAACTCTGTGATTTTGGATCGGCGAAAATGGGATTCTCATCGGCGATAGCGAATCCGTCGTCGTCGTCGTCGTCGCCGTCGAGCCCCTTCAGAACGAAGCAATGGATGATGGGATCTCCAGGTTACACAGATCCCCAATACTTAAGAACCGGAATCGCCTCAAAGAAGAACGACATTTACAGTTTCGGCGTGGTGGTTTTAGAGCTAATCACCGGAAAAGTGGCTTTCTGCTCGGAGAAGGGTCTGATTTTGACTTCAATTTTACCTCCAGAAGTTCGCGACGGCGAAGGAATTAAACCGTCGGCGGTGGCGGAACTGGTGGATCCGCGGCTCCGGGGAGAATTCGATAGCAATGAAGCCGGAGCGTTGCTATCAATCGCAGCGGCCTGCTTAGCGCAGCCGCCTGCACCGAGGCCGGTGATCGGAGGCGTGCTGCAGATGATGACAGAGAAGATCGGGAATGTGAGCGACGGGTTATGGGCGGGGAAACGTGGCAGTAAATTATTGGATGTGGGGAGATGGTAA 1092 51.1 MGLLRFFRVKRKSKVADKKTVLDAEIQPGFGARKFRWTEIEAFTKNFSTVVGSGGFSNVYLARTAPGIPAAVKILGASERLNRMFRQELDILLQLRHRNIVTFLGYCDERDEGALVFEYVSNGSLQEKLHNRPAAVVKTAVPVLPWKIRLAIAFQLAQAIEYLHEKCSLQIVHGDIKSSNILLDERFNCKLCDFGSAKMGFSSAIANPSSSSSSPSSPFRTKQWMMGSPGYTDPQYLRTGIASKKNDIYSFGVVVLELITGKVAFCSEKGLILTSILPPEVRDGEGIKPSAVAELVDPRLRGEFDSNEAGALLSIAAACLAQPPAPRPVIGGVLQMMTEKIGNVSDGLWAGKRGSKLLDVGRW 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8466818 8469101 + CmaCh15G013470.1 Cma15g01347 310497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01347 363 ProSiteProfiles Protein kinase domain profile. 45 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma15g01347 363 Pfam Protein kinase domain 49 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma15g01347 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Cma15g01347 363 Gene3D Phosphorylase Kinase; domain 1 8 119 - -
Cma15g01347 363 Gene3D Transferase(Phosphotransferase) domain 1 120 346 - -
Cma15g01347 363 PANTHER BNAA02G22020D PROTEIN 24 346 - -
Cma15g01347 363 CDD STKc_IRAK 51 339 - -
Cma15g01347 363 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 24 346 - -
Cma15g01347 363 SUPERFAMILY Protein kinase-like (PK-like) 31 337 IPR011009 -
Cma15g01347 363 ProSitePatterns Protein kinases ATP-binding region signature. 51 73 IPR017441 GO:0005524
Cma15g01347 363 SMART serkin_6 45 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00970 Cma15g01347 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g01347 Cma-Chr15:8466818 Cma04g00487 Cma-Chr4:2482425 3.74E-56 dispersed
Cma15g01347 Cma-Chr15:8466818 Cma02g00970 Cma-Chr2:5800532 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69164 PF00069 Pkinase 7.10E-39 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01347 - - cmax:111468884 701.049