Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01348 ATGTCGCAAATCGAGTGCTTACCCATCGACGCCCCAAAGAGGAGCCAACCTCGCCTTCCGACTCATGTCTCCCTCACTCGGAAGGTGGGAGCAGAATTTGTTGGCACATTCATCCTCATATTTGCTGCAACAGCCGCACCCATCATCAACCAAAAGTACAATAACATCACCTCTCTGATCGGAAACGCAGCATCCTCCGGCCTAGCGGTGATGATCGTAATTCTGTCGACGGGACACATCTCCGGCGCCCACCTGAACCCCTCACTCACTATCGCCTTAGCCGCCATCCGCCACTTCCCTTGGGTTCAAGTCCCTGCCTACCTCACCGCCCAAATCTCCGCCTCCATATGCGCCTCTTTCACTCTCAAAGGTATTTTTCACCCTTTCATGTCCGGCGGCGTTACAGTTCCCTCCGTCGGCACCGGCCAAGCCTTTGCTCTTGAATTCCTCATTACCTTCAATCTCTTGTTCGTGGTCACTGCTGTCACTACTGATACTCGCGTTGTTAGAGAGTTGGCCGGAATTTCCGTCGGAGCTACCGTGATGCTCAACATTCTTATCGCAGGGTCATCCACCGGTGGTTCAATGAACCCCGTGCGGACTCTTGGCCCCGCCGTGGCCGCCGGAAATTACCAAGAATTGTGGGTGTACATGGTGGCTCCTATACTTGGGGGGATTGTCGGTGCCGGAATCTACTCTGCCTTGAGAATCAAAGATGATGAAATGGATATTCCGCCGCACGTGAGGAGCTTCGGTCAGTACACAGGTGGCAGCTGTGTTCGTGTTTAA 789 53.74 MSQIECLPIDAPKRSQPRLPTHVSLTRKVGAEFVGTFILIFAATAAPIINQKYNNITSLIGNAASSGLAVMIVILSTGHISGAHLNPSLTIALAAIRHFPWVQVPAYLTAQISASICASFTLKGIFHPFMSGGVTVPSVGTGQAFALEFLITFNLLFVVTAVTTDTRVVRELAGISVGATVMLNILIAGSSTGGSMNPVRTLGPAVAAGNYQELWVYMVAPILGGIVGAGIYSALRIKDDEMDIPPHVRSFGQYTGGSCVRV 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8469875 8471653 - CmaCh15G013480.1 Cma15g01348 310498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01348 262 ProSitePatterns MIP family signature. 84 92 IPR022357 -
Cma15g01348 262 PANTHER AQUAPORIN NIP5-1 ISOFORM X1-RELATED 2 251 - -
Cma15g01348 262 Gene3D Glycerol uptake facilitator protein. 11 244 IPR023271 -
Cma15g01348 262 PRINTS Major intrinsic protein family signature 27 46 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma15g01348 262 PRINTS Major intrinsic protein family signature 66 90 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma15g01348 262 PRINTS Major intrinsic protein family signature 103 122 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma15g01348 262 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma15g01348 262 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma15g01348 262 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma15g01348 262 SUPERFAMILY Aquaporin-like 19 241 IPR023271 -
Cma15g01348 262 Pfam Major intrinsic protein 22 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma15g01348 262 PANTHER AQUAPORIN NIP2-1 2 251 IPR034294 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00971 Cma15g01348 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00179 Cma-Chr1:791522 Cma15g01348 Cma-Chr15:8469875 1.15E-110 dispersed
Cma04g00620 Cma-Chr4:3171483 Cma15g01348 Cma-Chr15:8469875 1.09E-96 dispersed
Cma14g00590 Cma-Chr14:2925480 Cma15g01348 Cma-Chr15:8469875 3.16E-67 dispersed
Cma15g01348 Cma-Chr15:8469875 Cma11g01025 Cma-Chr11:5589421 1.60E-58 dispersed
Cma15g01348 Cma-Chr15:8469875 Cma02g00971 Cma-Chr2:5803306 1.82E-140 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01348 K09874 - csv:101212485 383.259