Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma15g01353 | ATGGAGGGGATGGAAGAGGAAGCCGATCTTATTTCACTGCCTTCCCCTTCTCCAGTTGTAGCCGTTGCTATCAGTGGGAAGAAAAACAGTAGATATATAATTAGGTGGTCGTTGGAAAAGTTTCTACCTGAGGGCATCATTAATTTCAAGCTGCTACATGTCACACCGAGGATTACTAGTGTCCCAACTCCAATGGGGAATTCAATTCCAGTTTCACAAGTTCGTGACGATGTCGCTGCAGCTTATAGGAAAGAAATCGGGTGGCAGACGAACGAAAAGCTTCTTCCATACACGAAGATGTTTGCTCAAAGAAAGGTTCAACTTGATGTTGTGACTCTTGAAGCAGATGATGTGGCAAATGCAATAATAGAAGAGGTCACGAAGTGTTCAATTAGCAAGCTTGTTATAGGAGTTTCATCACAGGGTTTTTTCTCATGGAAACTAAATGGTCTATCCTCAAGAATATCAGCACTTGCACCTAGACATTGTACAGTCTATGCTATTTCAAAAGGACAATTAGCCTCAATACGGCAGCCTGATATGGAGACAAACGTGAGCATTAAAGATGATGCGAGTGAATCAAGTTCTGCAAATAGCTACTTGAGCTATTCATCCAGCTCAGTTACTGATAGCAATTCGAGCTTAACTACGCCCTACTCTGATTTCCCTTCTTCTTCCCCGTCCCTACCATTACAACGATTTCAAGCTCTTTCAACCATCAACCAGACTCTTCTTACGACGAAATCAAGCCCCATTAAAGCTGATCATTCTAGATGTCAATCTGTTGATATTGAGGATCAGGTGGATGGTGTTCGTTCTTCTTCCTATGTTTCAGATTGTGCACGAACATTGAGTCGAGACTCTAGCTGTAAAAGTTTGCCTACAGATGGCCAATCTTGGATTGATGAAGCTTCGTCCTCAGGCGTGTTCAGTGATCACGTTTCATGTGAAAGTCAGACGGATGTCAACTTTGAGCTTGAAAAGTTGAGAATCAAACTAAGACATGCGAGAGGAATGTACGCAATTGCTCAACGAGAGACGATCGATGCCTCTCGAAAGCTGAACCATCTAAATAAACAACGATTGGAGGATGCTAGGAAGCTCGACGAGATCAAGAACAGAGAGGTGGCTGCCAAAGAATTTGCAAGGGAAGAGAGAACGAAGCGTGAAGCTTTAAGAAGAGAAGCGAAGTACGTAAAAGAACGTGCCGAAAGAGAGGGCATCTACAGGAAGGAAGCAGAGACAAAAGCTCTTCAAGATGTCAAAGAGAAAGGAAAGCATGAGAATGCTCTTGAAGGACCTCTGCAGCAATACCAACATTTTCAGTGGGAAGATATTGTTTCTGCAACATCATCTTTCTCAGAGGATCTTAAGCTTGGAATGGGAGCACATGGAACAGTTTATAAGTGCAGTTTACATCATACAACTGTAGCAGTAAAGGTTCTTCATTCTAGAGATGATCACAAAAAGACCCAATTTCTTCAGGAGCTTGAAATCTTGAGCAAAATCCATCATCCTCATCTACTACTCCTCCTCGGTGCATGTCCGGATATGAACTGTCTGGTTTATGAGTACATGGAAAATGGTAGCTTGGAGGATAGGTTATACTGCAGAGGCAATACACCTGCAATTCCATGGTATGAGAGATTCCGAATAGCTTGGGAAATAGCCTCGGCTCTCGTCTTTCTTCACAGCTCGAAACCAAAACCGATAATCCACCGTGATCTTAAGCCAGCAAACATATTACTCGACCGAAACCTCGTGAGCAAAATCGGCGACGTCGGTCTATCTACCGTGTTTAACTCGGACCCATTAATGTCTACTGCATTCAATAACAGTGGACCTGTTGGGACTCTCTGTTACATTGATCCCGAGTACCAACGAAGCGGATTAATCTCGCTGAAGTCGGATGTGTATGCTTTTGGAATGGTGATCTTGCAGTTACTAACTGCAAAACCAGCAGTAGCACTAACCCATGTGGTGGAAACAGCCATTGATAACTGCAGTTTAGATAAGGTTCTGGATATAGAGGCTGGACATTGGCCGGTGGAAGAAACATATGAACTAGCAAGATTAGGACTTCACTGTGCAGAGATGCAACGTAAAGATAGGCCTGACTTGAAGGATCATGTGCTTCCCTTGTTGCTGACACTGAAAAACGTTGCTGATGAGGCTCGAAGTTTGGCCTCGAAAGTTCCAGCTCCGATTCCTAATCATTTCATCTGTCCAATTCTACAGGATGTGATGAATGATCCGTGTGTAGCTGCAGATGGGTACACGTACGATCGTTGGGCGATCGAGAAGTGGCTACAAGAGAACGATAACTCACCGATCACGAAGTTGCCATTGCCAGATAAGAATTTGATACCAAATTTCAGTCTTCTCTCTGCAATTGTTGAGTGGAACTCCAGAAAAAACTGA | 2421 | 43.45 | MEGMEEEADLISLPSPSPVVAVAISGKKNSRYIIRWSLEKFLPEGIINFKLLHVTPRITSVPTPMGNSIPVSQVRDDVAAAYRKEIGWQTNEKLLPYTKMFAQRKVQLDVVTLEADDVANAIIEEVTKCSISKLVIGVSSQGFFSWKLNGLSSRISALAPRHCTVYAISKGQLASIRQPDMETNVSIKDDASESSSANSYLSYSSSSVTDSNSSLTTPYSDFPSSSPSLPLQRFQALSTINQTLLTTKSSPIKADHSRCQSVDIEDQVDGVRSSSYVSDCARTLSRDSSCKSLPTDGQSWIDEASSSGVFSDHVSCESQTDVNFELEKLRIKLRHARGMYAIAQRETIDASRKLNHLNKQRLEDARKLDEIKNREVAAKEFAREERTKREALRREAKYVKERAEREGIYRKEAETKALQDVKEKGKHENALEGPLQQYQHFQWEDIVSATSSFSEDLKLGMGAHGTVYKCSLHHTTVAVKVLHSRDDHKKTQFLQELEILSKIHHPHLLLLLGACPDMNCLVYEYMENGSLEDRLYCRGNTPAIPWYERFRIAWEIASALVFLHSSKPKPIIHRDLKPANILLDRNLVSKIGDVGLSTVFNSDPLMSTAFNNSGPVGTLCYIDPEYQRSGLISLKSDVYAFGMVILQLLTAKPAVALTHVVETAIDNCSLDKVLDIEAGHWPVEETYELARLGLHCAEMQRKDRPDLKDHVLPLLLTLKNVADEARSLASKVPAPIPNHFICPILQDVMNDPCVAADGYTYDRWAIEKWLQENDNSPITKLPLPDKNLIPNFSLLSAIVEWNSRKN | 806 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 8506181 | 8514119 | + | CmaCh15G013530.1 | Cma15g01353 | 310503 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma15g01353 | 806 | ProSiteProfiles | Protein kinase domain profile. | 453 | 715 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma15g01353 | 806 | Coils | Coil | 354 | 374 | - | - | |
Cma15g01353 | 806 | CDD | RING-Ubox_WDSUB1_like | 740 | 780 | - | - | |
Cma15g01353 | 806 | Gene3D | Transferase(Phosphotransferase) domain 1 | 526 | 730 | - | - | |
Cma15g01353 | 806 | ProSitePatterns | Protein kinases ATP-binding region signature. | 459 | 480 | IPR017441 | GO:0005524 | |
Cma15g01353 | 806 | PANTHER | OS02G0152300 PROTEIN | 17 | 802 | - | - | |
Cma15g01353 | 806 | SUPERFAMILY | RING/U-box | 730 | 804 | - | - | |
Cma15g01353 | 806 | PANTHER | U-BOX DOMAIN-CONTAINING PROTEIN 35 | 17 | 802 | - | - | |
Cma15g01353 | 806 | Pfam | Protein tyrosine and serine/threonine kinase | 458 | 709 | IPR001245 | GO:0004672|GO:0006468 | |
Cma15g01353 | 806 | Coils | Coil | 326 | 346 | - | - | |
Cma15g01353 | 806 | SMART | serkin_6 | 453 | 715 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma15g01353 | 806 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 571 | 583 | IPR008271 | GO:0004672|GO:0006468 | |
Cma15g01353 | 806 | SMART | Ubox_2 | 739 | 801 | IPR003613 | GO:0004842|GO:0016567 | |
Cma15g01353 | 806 | Gene3D | Phosphorylase Kinase; domain 1 | 422 | 525 | - | - | |
Cma15g01353 | 806 | MobiDBLite | consensus disorder prediction | 205 | 227 | - | - | |
Cma15g01353 | 806 | ProSiteProfiles | U-box domain profile. | 735 | 806 | IPR003613 | GO:0004842|GO:0016567 | |
Cma15g01353 | 806 | SUPERFAMILY | Protein kinase-like (PK-like) | 433 | 716 | IPR011009 | - | |
Cma15g01353 | 806 | Pfam | U-box domain | 736 | 805 | IPR003613 | GO:0004842|GO:0016567 | |
Cma15g01353 | 806 | Coils | Coil | 382 | 402 | - | - | |
Cma15g01353 | 806 | CDD | STK_N | 19 | 171 | - | - | |
Cma15g01353 | 806 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 735 | 806 | IPR013083 | - | |
Cma15g01353 | 806 | SUPERFAMILY | Adenine nucleotide alpha hydrolases-like | 20 | 161 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma15g01353 | Cma-Chr15:8506181 | Cma09g00539 | Cma-Chr9:2408437 | 1.27E-136 | dispersed | |
Cma15g01353 | Cma-Chr15:8506181 | Cma02g00976 | Cma-Chr2:5829069 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
69165 | PF07714 | PK_Tyr_Ser-Thr | 5.80E-40 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma15g01353 | - | - | csv:101217665 | 1311.98 |