Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01353 ATGGAGGGGATGGAAGAGGAAGCCGATCTTATTTCACTGCCTTCCCCTTCTCCAGTTGTAGCCGTTGCTATCAGTGGGAAGAAAAACAGTAGATATATAATTAGGTGGTCGTTGGAAAAGTTTCTACCTGAGGGCATCATTAATTTCAAGCTGCTACATGTCACACCGAGGATTACTAGTGTCCCAACTCCAATGGGGAATTCAATTCCAGTTTCACAAGTTCGTGACGATGTCGCTGCAGCTTATAGGAAAGAAATCGGGTGGCAGACGAACGAAAAGCTTCTTCCATACACGAAGATGTTTGCTCAAAGAAAGGTTCAACTTGATGTTGTGACTCTTGAAGCAGATGATGTGGCAAATGCAATAATAGAAGAGGTCACGAAGTGTTCAATTAGCAAGCTTGTTATAGGAGTTTCATCACAGGGTTTTTTCTCATGGAAACTAAATGGTCTATCCTCAAGAATATCAGCACTTGCACCTAGACATTGTACAGTCTATGCTATTTCAAAAGGACAATTAGCCTCAATACGGCAGCCTGATATGGAGACAAACGTGAGCATTAAAGATGATGCGAGTGAATCAAGTTCTGCAAATAGCTACTTGAGCTATTCATCCAGCTCAGTTACTGATAGCAATTCGAGCTTAACTACGCCCTACTCTGATTTCCCTTCTTCTTCCCCGTCCCTACCATTACAACGATTTCAAGCTCTTTCAACCATCAACCAGACTCTTCTTACGACGAAATCAAGCCCCATTAAAGCTGATCATTCTAGATGTCAATCTGTTGATATTGAGGATCAGGTGGATGGTGTTCGTTCTTCTTCCTATGTTTCAGATTGTGCACGAACATTGAGTCGAGACTCTAGCTGTAAAAGTTTGCCTACAGATGGCCAATCTTGGATTGATGAAGCTTCGTCCTCAGGCGTGTTCAGTGATCACGTTTCATGTGAAAGTCAGACGGATGTCAACTTTGAGCTTGAAAAGTTGAGAATCAAACTAAGACATGCGAGAGGAATGTACGCAATTGCTCAACGAGAGACGATCGATGCCTCTCGAAAGCTGAACCATCTAAATAAACAACGATTGGAGGATGCTAGGAAGCTCGACGAGATCAAGAACAGAGAGGTGGCTGCCAAAGAATTTGCAAGGGAAGAGAGAACGAAGCGTGAAGCTTTAAGAAGAGAAGCGAAGTACGTAAAAGAACGTGCCGAAAGAGAGGGCATCTACAGGAAGGAAGCAGAGACAAAAGCTCTTCAAGATGTCAAAGAGAAAGGAAAGCATGAGAATGCTCTTGAAGGACCTCTGCAGCAATACCAACATTTTCAGTGGGAAGATATTGTTTCTGCAACATCATCTTTCTCAGAGGATCTTAAGCTTGGAATGGGAGCACATGGAACAGTTTATAAGTGCAGTTTACATCATACAACTGTAGCAGTAAAGGTTCTTCATTCTAGAGATGATCACAAAAAGACCCAATTTCTTCAGGAGCTTGAAATCTTGAGCAAAATCCATCATCCTCATCTACTACTCCTCCTCGGTGCATGTCCGGATATGAACTGTCTGGTTTATGAGTACATGGAAAATGGTAGCTTGGAGGATAGGTTATACTGCAGAGGCAATACACCTGCAATTCCATGGTATGAGAGATTCCGAATAGCTTGGGAAATAGCCTCGGCTCTCGTCTTTCTTCACAGCTCGAAACCAAAACCGATAATCCACCGTGATCTTAAGCCAGCAAACATATTACTCGACCGAAACCTCGTGAGCAAAATCGGCGACGTCGGTCTATCTACCGTGTTTAACTCGGACCCATTAATGTCTACTGCATTCAATAACAGTGGACCTGTTGGGACTCTCTGTTACATTGATCCCGAGTACCAACGAAGCGGATTAATCTCGCTGAAGTCGGATGTGTATGCTTTTGGAATGGTGATCTTGCAGTTACTAACTGCAAAACCAGCAGTAGCACTAACCCATGTGGTGGAAACAGCCATTGATAACTGCAGTTTAGATAAGGTTCTGGATATAGAGGCTGGACATTGGCCGGTGGAAGAAACATATGAACTAGCAAGATTAGGACTTCACTGTGCAGAGATGCAACGTAAAGATAGGCCTGACTTGAAGGATCATGTGCTTCCCTTGTTGCTGACACTGAAAAACGTTGCTGATGAGGCTCGAAGTTTGGCCTCGAAAGTTCCAGCTCCGATTCCTAATCATTTCATCTGTCCAATTCTACAGGATGTGATGAATGATCCGTGTGTAGCTGCAGATGGGTACACGTACGATCGTTGGGCGATCGAGAAGTGGCTACAAGAGAACGATAACTCACCGATCACGAAGTTGCCATTGCCAGATAAGAATTTGATACCAAATTTCAGTCTTCTCTCTGCAATTGTTGAGTGGAACTCCAGAAAAAACTGA 2421 43.45 MEGMEEEADLISLPSPSPVVAVAISGKKNSRYIIRWSLEKFLPEGIINFKLLHVTPRITSVPTPMGNSIPVSQVRDDVAAAYRKEIGWQTNEKLLPYTKMFAQRKVQLDVVTLEADDVANAIIEEVTKCSISKLVIGVSSQGFFSWKLNGLSSRISALAPRHCTVYAISKGQLASIRQPDMETNVSIKDDASESSSANSYLSYSSSSVTDSNSSLTTPYSDFPSSSPSLPLQRFQALSTINQTLLTTKSSPIKADHSRCQSVDIEDQVDGVRSSSYVSDCARTLSRDSSCKSLPTDGQSWIDEASSSGVFSDHVSCESQTDVNFELEKLRIKLRHARGMYAIAQRETIDASRKLNHLNKQRLEDARKLDEIKNREVAAKEFAREERTKREALRREAKYVKERAEREGIYRKEAETKALQDVKEKGKHENALEGPLQQYQHFQWEDIVSATSSFSEDLKLGMGAHGTVYKCSLHHTTVAVKVLHSRDDHKKTQFLQELEILSKIHHPHLLLLLGACPDMNCLVYEYMENGSLEDRLYCRGNTPAIPWYERFRIAWEIASALVFLHSSKPKPIIHRDLKPANILLDRNLVSKIGDVGLSTVFNSDPLMSTAFNNSGPVGTLCYIDPEYQRSGLISLKSDVYAFGMVILQLLTAKPAVALTHVVETAIDNCSLDKVLDIEAGHWPVEETYELARLGLHCAEMQRKDRPDLKDHVLPLLLTLKNVADEARSLASKVPAPIPNHFICPILQDVMNDPCVAADGYTYDRWAIEKWLQENDNSPITKLPLPDKNLIPNFSLLSAIVEWNSRKN 806
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8506181 8514119 + CmaCh15G013530.1 Cma15g01353 310503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01353 806 ProSiteProfiles Protein kinase domain profile. 453 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma15g01353 806 Coils Coil 354 374 - -
Cma15g01353 806 CDD RING-Ubox_WDSUB1_like 740 780 - -
Cma15g01353 806 Gene3D Transferase(Phosphotransferase) domain 1 526 730 - -
Cma15g01353 806 ProSitePatterns Protein kinases ATP-binding region signature. 459 480 IPR017441 GO:0005524
Cma15g01353 806 PANTHER OS02G0152300 PROTEIN 17 802 - -
Cma15g01353 806 SUPERFAMILY RING/U-box 730 804 - -
Cma15g01353 806 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 35 17 802 - -
Cma15g01353 806 Pfam Protein tyrosine and serine/threonine kinase 458 709 IPR001245 GO:0004672|GO:0006468
Cma15g01353 806 Coils Coil 326 346 - -
Cma15g01353 806 SMART serkin_6 453 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma15g01353 806 ProSitePatterns Serine/Threonine protein kinases active-site signature. 571 583 IPR008271 GO:0004672|GO:0006468
Cma15g01353 806 SMART Ubox_2 739 801 IPR003613 GO:0004842|GO:0016567
Cma15g01353 806 Gene3D Phosphorylase Kinase; domain 1 422 525 - -
Cma15g01353 806 MobiDBLite consensus disorder prediction 205 227 - -
Cma15g01353 806 ProSiteProfiles U-box domain profile. 735 806 IPR003613 GO:0004842|GO:0016567
Cma15g01353 806 SUPERFAMILY Protein kinase-like (PK-like) 433 716 IPR011009 -
Cma15g01353 806 Pfam U-box domain 736 805 IPR003613 GO:0004842|GO:0016567
Cma15g01353 806 Coils Coil 382 402 - -
Cma15g01353 806 CDD STK_N 19 171 - -
Cma15g01353 806 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 735 806 IPR013083 -
Cma15g01353 806 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 20 161 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g01353 Cma-Chr15:8506181 Cma09g00539 Cma-Chr9:2408437 1.27E-136 dispersed
Cma15g01353 Cma-Chr15:8506181 Cma02g00976 Cma-Chr2:5829069 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69165 PF07714 PK_Tyr_Ser-Thr 5.80E-40 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01353 - - csv:101217665 1311.98