Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01361 ATGGATTCCATAGACGACGCCTCTACTTTAGATCTCATCAGCCAACATCTCCTCAACGATTTCAACTCCATTGAAGCCTTCACTTCAAGTCTCAACTTCGACAACAATGGAGTAAAGCCTCCAATCTCCACAGCCCCTTTAAAGGTCAGTCCTCGGCGGCCGTCGCTAAACGTGGCGATTCCGCCCAAGACCTATTCTGTTGAACCCAAATCGGATGTGGGTATGAGCCGGCATTACAGGGGAGTACGCCGGCGGCCGTGGGGGAAATTCGCGGCGGAGATTCGAGACCCCAATAAACGTGGAGCTCGTGTTTGGCTTGGAACTTATGATACCGCCATTGAAGCTGCGAAAGCTTATGACAGAGCTGCTTTCAAGATGAGGGGAAGTAAAGCGATTTTGAATTTTCCTCTTGAAGCTGGAAAGGAGGCGGAAGAGCCGCCGTTGAAGGCGGAGGTTGGCCGGAAAAGGAGGAGAGAAAGTGAGGCTGTGGAATTAGGGAACAAGGCGGTGAAGAAAGAAGAACCGCCGGAAACAACAGAGAAAGAAATCCCGACGAGCATTTGTCCGTTGACGCCGTCATGTTGGGCGACGGTTTGGGATTGTGATATGAATGGGATTTTCAGCGTGCCGCCGTTATCGCCGTTAATGGGATATCCTCAATGCACAGTCATTTAA 675 50.81 MDSIDDASTLDLISQHLLNDFNSIEAFTSSLNFDNNGVKPPISTAPLKVSPRRPSLNVAIPPKTYSVEPKSDVGMSRHYRGVRRRPWGKFAAEIRDPNKRGARVWLGTYDTAIEAAKAYDRAAFKMRGSKAILNFPLEAGKEAEEPPLKAEVGRKRRRESEAVELGNKAVKKEEPPETTEKEIPTSICPLTPSCWATVWDCDMNGIFSVPPLSPLMGYPQCTVI 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8534204 8534878 - CmaCh15G013610.1 Cma15g01361 310511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01361 224 MobiDBLite consensus disorder prediction 143 184 - -
Cma15g01361 224 ProSiteProfiles AP2/ERF domain profile. 78 136 IPR001471 GO:0003700|GO:0006355
Cma15g01361 224 SMART rav1_2 78 142 IPR001471 GO:0003700|GO:0006355
Cma15g01361 224 Pfam AP2 domain 78 128 IPR001471 GO:0003700|GO:0006355
Cma15g01361 224 CDD AP2 78 136 IPR001471 GO:0003700|GO:0006355
Cma15g01361 224 PRINTS Ethylene responsive element binding protein signature 79 90 IPR001471 GO:0003700|GO:0006355
Cma15g01361 224 PRINTS Ethylene responsive element binding protein signature 118 138 IPR001471 GO:0003700|GO:0006355
Cma15g01361 224 Gene3D AP2/ERF domain 77 138 IPR036955 GO:0003700|GO:0006355
Cma15g01361 224 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 6 207 - -
Cma15g01361 224 SUPERFAMILY DNA-binding domain 78 137 IPR016177 GO:0003677
Cma15g01361 224 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 6 207 - -
Cma15g01361 224 MobiDBLite consensus disorder prediction 143 180 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma15g01361 Cma16g00219 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00983 Cma-Chr2:5856678 Cma15g01361 Cma-Chr15:8534204 8.34E-116 dispersed
Cma04g00361 Cma-Chr4:1803763 Cma15g01361 Cma-Chr15:8534204 4.98E-35 dispersed
Cma15g01361 Cma-Chr15:8534204 Cma16g01117 Cma-Chr16:8592398 6.26E-51 dispersed
Cma15g01360 Cma-Chr15:8530712 Cma15g01361 Cma-Chr15:8534204 1.26E-33 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36489 PF00847 AP2 1.90E-16 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01361 K09286 - csv:101221306 331.643