Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01372 ATGGCCCCTACTTCCCTTGCTTATCGCTTCCGACAATCTGTTGCCCCGACCGCCCTCCGATCCTATGCCGCCGAGTTCATCTCCACCTTCTTCTACGTCTTCTCTGTTGTCGGAGCATCAATCGCCTCCCGGAAGTTTGTGCCCGGGGCTGCTGCAACCGACCCATCGAGCCTTTTGGTGGTGGCTATGGCCAATGCCTTTGCTTTGGCCTCAGCCGTTTACATTGCTGCCAACGTCTCCGGCGGACATGTCAACCCGGCGGTGACGTTCGGGATGGCGGTCGGCGGCCATATCAGTGTTCCTACTGCTCTCTTTTACTGGTTTGCTCAAATGCTTGCCTCTATCATGGCTTGCATTGTTCTTAGAGTCACCATTGTTGGACAGCGCGTTCCAAGCTATGTCATCGCCGAGGAAATGACGGGCTTCGGAGCGTCGGTGGTAGAAGGTGTATTGACGTTTGCTCTAGTGTACACTGTTTTTGTCGCTAGTGACCAGAGAAGAGGTTCATGCAGTGCGATCGGTGCTGTGATGGTCGGGCTGATGGCCGGAGCCAATGTGCTGGCTGCCGGGCCATTTTCCGGTGGATCGGTGAACCCAGCGTGTGCGTTCGGGTCGGCAATTGTGGCTGGGAGTTTCAAGAACCAGGCAGTGTACTGGATCGGGCCGTTGATCGGAGCAGCTCTGGCCGGGATTGTTCACGATAATGTGGTTTTTCCGACTGAAAATGTAGATTCTTTCACAGGGGTTCCTGACGCTGTTGCTGTGTAA 768 55.21 MAPTSLAYRFRQSVAPTALRSYAAEFISTFFYVFSVVGASIASRKFVPGAAATDPSSLLVVAMANAFALASAVYIAANVSGGHVNPAVTFGMAVGGHISVPTALFYWFAQMLASIMACIVLRVTIVGQRVPSYVIAEEMTGFGASVVEGVLTFALVYTVFVASDQRRGSCSAIGAVMVGLMAGANVLAAGPFSGGSVNPACAFGSAIVAGSFKNQAVYWIGPLIGAALAGIVHDNVVFPTENVDSFTGVPDAVAV 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8592592 8593911 + CmaCh15G013720.1 Cma15g01372 310522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01372 255 SUPERFAMILY Aquaporin-like 13 242 IPR023271 -
Cma15g01372 255 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Cma15g01372 255 Pfam Major intrinsic protein 16 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma15g01372 255 Gene3D Glycerol uptake facilitator protein. 6 247 IPR023271 -
Cma15g01372 255 PANTHER AQUAPORIN TIP5-1-RELATED 5 251 - -
Cma15g01372 255 PANTHER AQUAPORIN-8 5 251 IPR034294 -
Cma15g01372 255 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma15g01372 255 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma15g01372 255 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma15g01372 255 PRINTS Major intrinsic protein family signature 20 39 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma15g01372 255 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma15g01372 255 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g01372 Cma-Chr15:8592592 Cma18g00110 Cma-Chr18:540120 2.17E-58 dispersed
Cma15g01372 Cma-Chr15:8592592 Cma03g01199 Cma-Chr3:8008162 9.01E-61 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01372 K09873 - csv:101214078 435.261