Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01381 ATGGAGGAGAAAGAGGGAGTGGATTTCGGATTTGCAGTAGAAGTGAGCCAAGCTCCAGAGAGCTTAGGAATGATGGATTTGAGACCTGAAAATACAAGCACAGATAGTGAGTCACCGCCGCCGCAGCCGCAGTCGCAGTCGCAGTCACAGCCGCTGGCGAGTGTTCCAACGGTGGCGGCTACAGATGGGAAGAAGAAAAGAGGGAGGCCGAGAAAGTACGGTCCCAATGGGACTGTAGCTCCAACTTTGTCGCCAATGCCGATTTCGTCTTCGATTCCGCTGAGTGGAGAATTTCCGGTTTGGAAACGGGGAAGAGGGCGGTCAGTAGAGTCGATTAAGAAGCCGCGACGAGGGTACGAATTTGAGATTCCAGGTAACAAGGTTGCCTTCATTGCTGGGGCAGATTTCACACCTCACGTGATCACTGTTAATATTGGTGAGGATGTTAACTTGAAAATCATGTCATTTTCTCAACAAGGATCTCGGGCAATTTTTATACTCTCTGCTAATGGTATGGTTTCGAATGTTACACTTAGGCAGTCAACATCTTCTGGGGGCACTCTTACGTATGAGGGTCGATTTGAGATACTTTCATTGTCTGGATCATATATGCCTTCTGAGAGCGGTGGAACAAAGAGCCGATCTCGAGGGGTGAGTGTTTCTTTGGCTGGCTCAGATGGCCGAGTGATGGGTGGAGAACTTGCCGGCAGGCTGATAGCAGCTGGTCCAGTACAGGTGGTGGTGGGCAGTTTCCTACCACCAGTTCACCAGAAGGAACATAAACCAAAGAAGAGTAGGATGGAACCTAAATCGAACGCAATTTTACCTCCAGCCGATGTTCTTTCTGGCGAAGGGACGAACGGAGTCCTTGGCGGAGTGGAGGCCATAGTCCCATCTACTCTAATTGAAGATAAACCAGCCTCTTTAGACCAAAATCCAGCTTTTAAAACTCCACAAGTCAACGAAAAGTTACCTTTTCCACAAGAATCAAGAGGTGTACTCAACCATTCAAACCATGAGGTTTCTTGTTGA 1032 48.45 MEEKEGVDFGFAVEVSQAPESLGMMDLRPENTSTDSESPPPQPQSQSQSQPLASVPTVAATDGKKKRGRPRKYGPNGTVAPTLSPMPISSSIPLSGEFPVWKRGRGRSVESIKKPRRGYEFEIPGNKVAFIAGADFTPHVITVNIGEDVNLKIMSFSQQGSRAIFILSANGMVSNVTLRQSTSSGGTLTYEGRFEILSLSGSYMPSESGGTKSRSRGVSVSLAGSDGRVMGGELAGRLIAAGPVQVVVGSFLPPVHQKEHKPKKSRMEPKSNAILPPADVLSGEGTNGVLGGVEAIVPSTLIEDKPASLDQNPAFKTPQVNEKLPFPQESRGVLNHSNHEVSC 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8645120 8651564 + CmaCh15G013810.1 Cma15g01381 310531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01381 343 MobiDBLite consensus disorder prediction 256 280 - -
Cma15g01381 343 Gene3D - 138 269 - -
Cma15g01381 343 ProSiteProfiles PPC domain profile profile. 133 272 IPR005175 -
Cma15g01381 343 MobiDBLite consensus disorder prediction 27 56 - -
Cma15g01381 343 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 8 327 - -
Cma15g01381 343 SUPERFAMILY AF0104/ALDC/Ptd012-like 135 265 - -
Cma15g01381 343 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 8 327 IPR039605 GO:0003680
Cma15g01381 343 MobiDBLite consensus disorder prediction 1 90 - -
Cma15g01381 343 Pfam Plants and Prokaryotes Conserved (PCC) domain 138 251 IPR005175 -
Cma15g01381 343 CDD DUF296 137 251 IPR005175 -
Cma15g01381 343 MobiDBLite consensus disorder prediction 307 343 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma15g01381 Cma18g01194 CCT
Cma15g01381 Cma18g01194 ECH
Cma02g01007 Cma15g01381 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01978 Cma-Chr14:13908339 Cma15g01381 Cma-Chr15:8645120 8.08E-70 dispersed
Cma15g01381 Cma-Chr15:8645120 Cma18g01194 Cma-Chr18:9477137 7.04E-101 dispersed
Cma15g01381 Cma-Chr15:8645120 Cma02g01007 Cma-Chr2:5983347 3.40E-166 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01381 - - csv:101211908 510.375