Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01385 ATGGCGTATGCAGCGATGAAGCCTACGAAGGCTGGTTTGGAGGATGCACAAGAGCAGATCCACAAGATTAGGATCACTCTTTCGTCGAAGAACGTGAAGAACCTTGAAAAGGTTTGTGCTGATTTGGTTCGGGGTGCCAAGGACAAGAGACTGAGGGTTAAGGGGCCTGTGAGGATGCCAACAAAAGTCCTGCACATCACCACCAGGAAATCTCCCTGCGGTGAAGGTACTAACACATGGGACAGATTTGAACTTCGTGTCCATAAGCGGGTTATCGACCTCTTTAGCTCTGCTGATGTTGTTAAGCAGATCACATCTATAACCATCGAACCAGGTGTTGAGGTTGAAGTCACAATTGCAGATTGA 366 47.81 MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8678411 8680743 + CmaCh15G013850.1 Cma15g01385 310535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01385 121 PRINTS Ribosomal protein S10 family signature 22 35 IPR001848 GO:0003735|GO:0005840|GO:0006412
Cma15g01385 121 PRINTS Ribosomal protein S10 family signature 57 72 IPR001848 GO:0003735|GO:0005840|GO:0006412
Cma15g01385 121 PRINTS Ribosomal protein S10 family signature 79 93 IPR001848 GO:0003735|GO:0005840|GO:0006412
Cma15g01385 121 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 1 121 IPR001848 GO:0003735|GO:0005840|GO:0006412
Cma15g01385 121 Pfam Ribosomal protein S10p/S20e 24 118 IPR027486 -
Cma15g01385 121 SUPERFAMILY Ribosomal protein S10 22 119 IPR036838 -
Cma15g01385 121 Gene3D Ribosomal protein S10 domain 6 121 IPR036838 -
Cma15g01385 121 ProSitePatterns Ribosomal protein S10 signature. 46 61 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cma15g01385 121 Hamap 30S ribosomal protein S10 [rpsJ]. 20 119 IPR001848 GO:0003735|GO:0005840|GO:0006412
Cma15g01385 121 PANTHER RIBOSOMAL PROTEIN S10-RELATED 1 121 - -
Cma15g01385 121 SMART Ribosomal_S10_2 24 118 IPR027486 -
Cma15g01385 121 TIGRFAM uS10_euk_arch: ribosomal protein uS10 21 119 IPR005729 GO:0003735|GO:0006412|GO:0015935
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00323 Cma15g01385 CCT
Cma02g01014 Cma15g01385 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00323 Cma-Chr4:1593757 Cma15g01385 Cma-Chr15:8678411 3.84E-83 dispersed
Cma15g01385 Cma-Chr15:8678411 Cma16g00181 Cma-Chr16:793823 7.22E-76 dispersed
Cma15g01385 Cma-Chr15:8678411 Cma02g01014 Cma-Chr2:6020648 4.04E-87 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01385 K02969 - csv:101213765 236.113