Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01396 ATGGTTCGAGGAAAAGTTGAAATGAAACGGATTGAGAATTCGACAAGTCGTCAAGTGACATTCTCAAAGAGACGAAATGGGATATTGAAAAAGGCTTATGAGCTTTCTGTTCTTTGTGATGCTGAAGTTTCTGTCATCATTTTCTCTCAGAGAGGAAGGCTCTATGAGTTCTCCAGCTCCATTATGCAAAAGACAATCGAACGCTACCGCAAGTTTGGGAAAGGTGGAGAAACCAACACTTTTCAATCTGAAGGATATATGCAGCAAATGAAGCAAGAAGCTGAAATGACGGCAAAGAAAATTGAGGAACTTGAGAAGTCACAAAAGAAGCTTTTGGGACGAGGCTTGGATTCTTGTTCCTTTGAGGAAGTTCGTGAGATCGAAAAACAGTTGATACTAAGCTTAACCCGCATTAGAGAAAGAAAGGCTTTGCTGTTCAAGGAGCAGAAAGAGAAGCTGATTGAAAAGGGGAAACTCCTTATAGAAGAAAACAAAAAGTTATCTGCTAAGTGTGGTACTAAGCCATGGGAACAAGAAGGTATTGAAGCAGAGGGAGGCATAATGAGTTTATGCAGCCAAAGTAGACAGGGTTCTGACATACAGACTGAATTGTTCATTGGATTGTCTTGCTCATAA 636 40.41 MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQRGRLYEFSSSIMQKTIERYRKFGKGGETNTFQSEGYMQQMKQEAEMTAKKIEELEKSQKKLLGRGLDSCSFEEVREIEKQLILSLTRIRERKALLFKEQKEKLIEKGKLLIEENKKLSAKCGTKPWEQEGIEAEGGIMSLCSQSRQGSDIQTELFIGLSCS 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8798660 8807724 - CmaCh15G013960.1 Cma15g01396 310546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01396 211 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cma15g01396 211 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cma15g01396 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cma15g01396 211 Pfam K-box region 87 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma15g01396 211 Coils Coil 87 107 - -
Cma15g01396 211 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Cma15g01396 211 CDD MADS_MEF2_like 3 72 IPR033896 GO:0000977|GO:0045944
Cma15g01396 211 PANTHER MADS-BOX PROTEIN SOC1 1 208 - -
Cma15g01396 211 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma15g01396 211 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cma15g01396 211 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cma15g01396 211 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cma15g01396 211 PANTHER MADS BOX PROTEIN 1 208 - -
Cma15g01396 211 SUPERFAMILY SRF-like 3 76 IPR036879 GO:0003677|GO:0046983
Cma15g01396 211 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01025 Cma15g01396 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01494 Cma-Chr2:8539914 Cma15g01396 Cma-Chr15:8798660 9.63E-56 dispersed
Cma03g00053 Cma-Chr3:480593 Cma15g01396 Cma-Chr15:8798660 1.35E-38 dispersed
Cma06g01116 Cma-Chr6:7524448 Cma15g01396 Cma-Chr15:8798660 5.81E-53 dispersed
Cma08g00943 Cma-Chr8:5878385 Cma15g01396 Cma-Chr15:8798660 5.69E-24 dispersed
Cma15g01186 Cma-Chr15:7507315 Cma15g01396 Cma-Chr15:8798660 3.80E-59 dispersed
Cma15g01396 Cma-Chr15:8798660 Cma14g01999 Cma-Chr14:14020249 8.22E-44 dispersed
Cma15g01396 Cma-Chr15:8798660 Cma02g01025 Cma-Chr2:6091642 1.05E-109 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36491 PF01486 K-box 6.30E-19 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01396 - - csv:101212323 325.479