Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01400 ATGGCTAAGGAAGAAGTTAGCATAAGTGATGAAGCTGACCGTCGGTTACCTGCACACTCCAGCGCCGAATGCGACCCACTGGCTGCTTCGACATCGGCGTCTGTAGGACCGCTGTGGCATCCTAGGCAACTCGGTTTTAGTCCTTACTTGTACCGGGAAGATGCTGCTGCTGCTGCTGCGAAACCCCAAGATTCGCGTTTTGCCGCCAGAATACCTCTGGTTGCTAGATTAACCAAGAACATCGTTGAAACCTACAGAAAATGCAATCCCGAGTTTAAATATTCAGAAGAGTTAAACCTGAAGAGATTTTTGACGAGTCCATCAACTGGAGTCCTCAATGATGGCTATGATAATGTGAACTCAGATCTTATTTTGACGGTGAACTCTGTTTTACTCAATTCTGATACACAACGGAGATATGTTGTCAAAGATCTACTTGGTCATGGGACCTTTGGGCAGGTTGCTAAATGCTGGGTTGCAGAAACTAACAGCTTCGTAGCTTTGAAGATCATAAAAAACCAACCTGCATATTATCAGCAAGCACTGGTTGAAGTATCTATTTTGACATTGTTAAATAAGAAGTATGATCCTGAGGACAAGCATCATATTGTCCGTATTTATGATTACTTTGTATATCAACGTCATCTGTGCATTTGCTTCGAGCTGCTTGATACAAATTTGTATGAGCTTATCAAGATCAATCATTTTAGGGGGTTGTCATTGAGCATTGTTCAAATGTTATCCAAACAGATCTTATGCGGGCTTGCACTATTGAAAGATGCTGGCATTATTCATTGTGATTTAAAGCCAGAAAATATTCTTTTATGCACGAGCAGTGCCAAGCCGGCAGAAATTAAAATAATTGACTTCGGATCAGCTTGCATGGAAGCCCGCACTGTTTATTCTTACATCCAGAGCCGCTACTATAGGTCTCCAGAAGTCCTGCTCGGATATCAATACACTACAGCTATAGATATGTGGTCCTTTGGATGCATAGTTGCTGAGTTGTTTCTTGGACTGCCATTATTTCCAGGAGCTTCTGAGTTTGATTTATTGAGGCGGATGATCGACATTCTTGGGGGACAGCCTCCGGATTATGTTCTGAAGGAGGCAAAACATACTAGCAAATTCTTTAAATTTATTGGAGGTTTCCATAATGAAATTGGTGATATTTATGGAAGTGGTCGAAGCAGTTTTCAAGCATTAAAAGCAGATGAATATGAAGCTAGAGAGATGAAAAAGCCTTCAATTGGAAAAGAGTATTTCAATCGAATGAACCTCGAGGCAATTGTGACTAACTACCCTTACAGAAAGAACTTAGCTGAGGAAGATATTAGGAAAGAGAGTCAAGTACGATTGGCCTTAATTGATTTCCTAAAGGGCCTTGTAGAGTTCGATCCTGCAAAAAGGTGGTCGCCTTTCCAGGCCTCCAAACACCCTTTTGTGACAGGAGAGCCTTTCACATGCCCATACACGCCTCCACCGGAGACCCCACGTTTGCTTGTTTCACAAAGCATAAAGGTGGACAACCATCATCCAGGTGGAGGGCATTGGTTTGCAGCTGGTCTCTCTCCCAATATTGCAGGTAGGAACAGAGTTCTGCAGAGCACCCCACATTTTCAAATGGTACCATATGTCCATGCCAACAGTTATGGCAGCGTTGGAAGTCATGGTAGCTACAATGAAACTATTGGGTTCGGAAACAGCTACGGTAGTTACGGAGACAATGGTATGCTTGCCTATTATTCACCTGTTGGTCCATCTGGAATGAATATGCATCCTCAGGGAAGGATATCAATGCGTGCAAGTAGCCCAGATACTCGGCAGAGGGTTTTCCAATTATCACATGGCAATGGGATTGGTGTGAGCCCATCAACCGGGAACTTTGCGCCACTGCCCCTAGGCACGAGTCCATCGCAGTTTACTCCACCGAGCAGCTATGGTCAAGTTTCAGTGGGCTCTCCTGGACATTTTGGGCCAACTTCTCCTGCAAGGGGTAGTTGTCAGGGATCGCCTTTGGGGAAAATGGCTACAGTCGGTCAATTTAATAGAAGGAAATTTTGGGATTACTCTGGCAGTCATGATGGTTCTTCATCTTCGCACTGGCAAGGTCAATCTACTGAAGGCACGAGTTACGGACTACAAGCAGATGGGAACTCTTTACATGGTTGCTCCCCATCTCATCTACCACCAAGTAGCAATGCCAGCAGCTGGAAGCAGCAGCATCAAGTAGGTAGTGGAAGCTCTGCTGGTTACCCTACCATTCAGAGTATGCCAGGAGCTCATTTGCCTGGTTCCAATATGCAATTTTCGCAACCATCGGACGTGGCTCGGAATAAGTCTGAATTGCCTGATCCTGGAGATTGGGATCCCAATTATAGTGATGAACTACTCCTCCAAGATGATGGGGATTCAGATGTCAGCAGCATTGCGAGTGAGTTGAGCAACATGCATGTGGGTTCATCTAATCCATCGATTGGGATTGGGATTGGGATTGGGATTGGAAGATTTCGTATGCCAAGCGCTAATTTGAATGTAACCTCACAAAGAAAAAGTGGACATGTCCAAGAGATGGGAAGCCCGCCCTCAGGTCAAGATTTGTACACCGGATATGGTCGTCCCTCGTCGAAACATTCCCATTTCATGGCTCATAGTTCACACAATTCCCCGAGCCGTTTGGGGCAGCAGCCTGTTGAGCGATGGAAGGAAGGGAGAAGTAGGAAGGTCGGAGGAGGTTACGAGTGGAACCCGGTGAAGATCCAACCGCCTCTTGCGGGCTATAGTTCTGGAGGCCCTGGTTCTCCCGGAGGAGGAGGAAGTGGTGGTGGTGGTGGTGGTGGCGGCGGCTCGTTCAGGAGTAGGAGTGGGATGTCATGGGGTAAATATGATGGTGATGATGCTTTGAAAACCACAGTATATGGTGTGAATGTGAATGAATGA 2940 45.71 MAKEEVSISDEADRRLPAHSSAECDPLAASTSASVGPLWHPRQLGFSPYLYREDAAAAAAKPQDSRFAARIPLVARLTKNIVETYRKCNPEFKYSEELNLKRFLTSPSTGVLNDGYDNVNSDLILTVNSVLLNSDTQRRYVVKDLLGHGTFGQVAKCWVAETNSFVALKIIKNQPAYYQQALVEVSILTLLNKKYDPEDKHHIVRIYDYFVYQRHLCICFELLDTNLYELIKINHFRGLSLSIVQMLSKQILCGLALLKDAGIIHCDLKPENILLCTSSAKPAEIKIIDFGSACMEARTVYSYIQSRYYRSPEVLLGYQYTTAIDMWSFGCIVAELFLGLPLFPGASEFDLLRRMIDILGGQPPDYVLKEAKHTSKFFKFIGGFHNEIGDIYGSGRSSFQALKADEYEAREMKKPSIGKEYFNRMNLEAIVTNYPYRKNLAEEDIRKESQVRLALIDFLKGLVEFDPAKRWSPFQASKHPFVTGEPFTCPYTPPPETPRLLVSQSIKVDNHHPGGGHWFAAGLSPNIAGRNRVLQSTPHFQMVPYVHANSYGSVGSHGSYNETIGFGNSYGSYGDNGMLAYYSPVGPSGMNMHPQGRISMRASSPDTRQRVFQLSHGNGIGVSPSTGNFAPLPLGTSPSQFTPPSSYGQVSVGSPGHFGPTSPARGSCQGSPLGKMATVGQFNRRKFWDYSGSHDGSSSSHWQGQSTEGTSYGLQADGNSLHGCSPSHLPPSSNASSWKQQHQVGSGSSAGYPTIQSMPGAHLPGSNMQFSQPSDVARNKSELPDPGDWDPNYSDELLLQDDGDSDVSSIASELSNMHVGSSNPSIGIGIGIGIGRFRMPSANLNVTSQRKSGHVQEMGSPPSGQDLYTGYGRPSSKHSHFMAHSSHNSPSRLGQQPVERWKEGRSRKVGGGYEWNPVKIQPPLAGYSSGGPGSPGGGGSGGGGGGGGGSFRSRSGMSWGKYDGDDALKTTVYGVNVNE 979
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8826657 8840911 + CmaCh15G014000.1 Cma15g01400 310550

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01400 979 Gene3D Phosphorylase Kinase; domain 1 104 220 - -
Cma15g01400 979 Pfam Protein kinase domain 140 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma15g01400 979 PANTHER BNAC04G29850D PROTEIN 37 721 - -
Cma15g01400 979 MobiDBLite consensus disorder prediction 847 900 - -
Cma15g01400 979 MobiDBLite consensus disorder prediction 1 20 - -
Cma15g01400 979 MobiDBLite consensus disorder prediction 921 966 - -
Cma15g01400 979 MobiDBLite consensus disorder prediction 636 656 - -
Cma15g01400 979 MobiDBLite consensus disorder prediction 636 675 - -
Cma15g01400 979 ProSitePatterns Serine/Threonine protein kinases active-site signature. 263 275 IPR008271 GO:0004672|GO:0006468
Cma15g01400 979 ProSitePatterns Protein kinases ATP-binding region signature. 146 169 IPR017441 GO:0005524
Cma15g01400 979 MobiDBLite consensus disorder prediction 1 23 - -
Cma15g01400 979 SUPERFAMILY Protein kinase-like (PK-like) 136 504 IPR011009 -
Cma15g01400 979 Gene3D Transferase(Phosphotransferase) domain 1 221 483 - -
Cma15g01400 979 MobiDBLite consensus disorder prediction 692 808 - -
Cma15g01400 979 CDD PKc_YAK1 140 482 - -
Cma15g01400 979 MobiDBLite consensus disorder prediction 692 778 - -
Cma15g01400 979 PANTHER DUAL SPECIFICITY PROTEIN KINASE 37 721 - -
Cma15g01400 979 SMART serkin_6 140 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma15g01400 979 ProSiteProfiles Protein kinase domain profile. 140 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma15g01400 979 MobiDBLite consensus disorder prediction 879 895 - -
Cma15g01400 979 MobiDBLite consensus disorder prediction 847 863 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01400 K18670 YAK1; dual specificity protein kinase YAK1 [EC:2.7.12.1] - csv:101210441 1647.48
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma15g01400 Cma18g01030 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00768 Cma-Chr13:6634688 Cma15g01400 Cma-Chr15:8826657 1.34E-45 dispersed
Cma13g01149 Cma-Chr13:8443353 Cma15g01400 Cma-Chr15:8826657 3.17E-53 dispersed
Cma15g00134 Cma-Chr15:628600 Cma15g01400 Cma-Chr15:8826657 5.12E-58 dispersed
Cma15g01400 Cma-Chr15:8826657 Cma18g00202 Cma-Chr18:1089427 3.16E-46 dispersed
Cma18g01030 Cma-Chr18:8576049 Cma15g01400 Cma-Chr15:8826657 4.52E-40 dispersed
Cma15g01400 Cma-Chr15:8826657 Cma02g01031 Cma-Chr2:6134508 0 wgd
Cma15g01400 Cma-Chr15:8826657 Cma04g01533 Cma-Chr4:7763614 3.29E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g291 . . Bda01g01858 . . . Bma14g01704 . . Cmo18g01042 . Cma18g01030 . Car18g00952 Sed14g1516 Cpe09g00291 . Bhi07g01339 Tan04g0874 Cmetu10g1483 Lac13g0482 Hepe01g1204 . . Cla05g02311 Cam05g2484 . . Clacu05g2479 Cmu05g2340 . . . Cone6ag0456 Cone9ag0467 Lsi04g00266 Csa05g02600 Chy10g01135 Cme10g00272 . Blo11g00836 . . Bpe11g01696 . . . . . . . Cma15g01400 . Car15g01262 Cpe13g00051 . . . . . . . . Cla01g00533 Cam01g0553 Cec01g0545 Cco01g0569 Clacu01g0551 Cmu01g0524 Cre09g1986 Lsi09g00576 . Chy09g00937 Cme09g01465
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006755 0 3 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69170 PF00069 Pkinase 1.40E-49 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01400 Cma_Chr15 FPKM 29.712948 34.647949 31.087648 33.840664 22.128456 21.277021 23.193777 31.976938 27.722799 29.755335