Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01410 ATGGAGATTGCTTCGTTTTCCTTTCTTCTTCTTCTTCTACCTCTAATCTTCACCATTCTCAGGCACATCTGTTCATCTTCTAAACAGCCGCCACTTCCTCCAGGTCCAAATCCATGGCCGATTCTTGGAAATCTCCTTCAGATCGGTCAAAACGCCCACATTTCAATGACCCAATTCTCTCATTTCTACGGCCCTTTAATCTCCCTCAAGCTCGGAGCTCAGCGCCTGGTGGTCGCTTCTTCACCGGCCGCCGCCGCCGCCATTCTCAAGACTCAAGATCGCCTTCTATCTGCTCGATACATTTTCCAAATGACCCCTGATCGACCTCTGCACGATAACTGCTCGCTTCTTTTCTCACCGGAATGCGGCGATCGTTGGAAGAATCTGAGATCCATTTGCAGAGCCAAATTGTTTACAGCGAGAGCGATCGAATCCCAAGCCAGTTTGAGAAGGAAGAAGATGAACGACATGGTGGAATTCTTGCAGTCAAAACAGGGATCTGTGGTGGAGATTAAAGAACTTGTGTTTATTACTGTTTTCAACACTCTTTCTAACTTCATCTTCTCTAGGGATTTGGTTGGTTTTGTGGGTGATGGGTTCAATGGGATTAAAGGGTCTTTCAAGAACATCATCGATTTGGGTTTGATCCCAAATTTAGCTGACTTTTACCCTTTGCTTAGAAGCTTCGATCTTCAAGGACTTCGAAAGAAAGCTGCTATCTACAAAAACCAAGTCGATTCTTCGTGGGAAATTCTTATTAAAGAACGAAGAACAATCCATAGTCGAGACGTTTCAGCTGCTAGCGATTTCTTGGATGTTTTGATCGAAAGTGGATTCACCGATGAACAAATTAGCTACTTGATTGTTGAAGTGTTGTCCGCCGGCACGGATACAACGACCACGACGGTGGAGTGGGCGATGGCAGAGCTGTTGAAGAACAGAGACATAATGAACAGAGTGCGAGAGGAAACAAAGAAGGCAATAAACGGAGGCGCCATTGACGAATCAAAGCTCTCTGAGCTTCATTATCTATGGAAATGCGTGAAAGAAACTCTACGGCTGCATCCGCCTGCGCCATTTCTTCTTCCACGGTATGCTCCAGAAGCTTGTGAGCTTATGGGGTACTCTGTTCCTAAAGACACCATGATTTTTGTGAACGTTTGGGGGATTGGGCGAGACCCTTCAATCTGGGAAGATCCTGGATCGTTCAAACCAGAAAGATTTGATGGTTTTGATGCAGATTTGAAGGGTCATGATTATCGATTCCTGCCATTTGGAGGAGGCAGAAGGATTTGCCCTGGGCTTCCCATGGCGGCGGTGCAAGTGCCTTTAATCTTAGCCACCTTGATTCATAACTTTGAATGGTACCTTCCTAATGATGAGGATGCGTCAACGCTGGATTTGAATGGAAGGCTTGGTGTAACATTGCAAAAGGAAGAACCTCTTAAGCTCCTCTCCAAAAAGAGGAACTGA 1473 45.69 MEIASFSFLLLLLPLIFTILRHICSSSKQPPLPPGPNPWPILGNLLQIGQNAHISMTQFSHFYGPLISLKLGAQRLVVASSPAAAAAILKTQDRLLSARYIFQMTPDRPLHDNCSLLFSPECGDRWKNLRSICRAKLFTARAIESQASLRRKKMNDMVEFLQSKQGSVVEIKELVFITVFNTLSNFIFSRDLVGFVGDGFNGIKGSFKNIIDLGLIPNLADFYPLLRSFDLQGLRKKAAIYKNQVDSSWEILIKERRTIHSRDVSAASDFLDVLIESGFTDEQISYLIVEVLSAGTDTTTTTVEWAMAELLKNRDIMNRVREETKKAINGGAIDESKLSELHYLWKCVKETLRLHPPAPFLLPRYAPEACELMGYSVPKDTMIFVNVWGIGRDPSIWEDPGSFKPERFDGFDADLKGHDYRFLPFGGGRRICPGLPMAAVQVPLILATLIHNFEWYLPNDEDASTLDLNGRLGVTLQKEEPLKLLSKKRN 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8894565 8896980 + CmaCh15G014100.1 Cma15g01410 310560

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01410 490 Gene3D Cytochrome P450 20 490 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma15g01410 490 PANTHER CYTOCHROME P450 71B11-RELATED 7 487 - -
Cma15g01410 490 Pfam Cytochrome P450 33 476 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma15g01410 490 PRINTS P450 superfamily signature 294 311 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma15g01410 490 PRINTS P450 superfamily signature 346 357 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma15g01410 490 PRINTS P450 superfamily signature 423 432 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma15g01410 490 PRINTS P450 superfamily signature 432 443 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma15g01410 490 PANTHER (S)-N-METHYLCOCLAURINE 3'-HYDROXYLASE ISOZYME 1-LIKE 7 487 - -
Cma15g01410 490 PRINTS E-class P450 group I signature 60 79 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma15g01410 490 PRINTS E-class P450 group I signature 283 300 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma15g01410 490 PRINTS E-class P450 group I signature 303 329 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma15g01410 490 PRINTS E-class P450 group I signature 345 363 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma15g01410 490 PRINTS E-class P450 group I signature 386 410 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma15g01410 490 PRINTS E-class P450 group I signature 422 432 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma15g01410 490 PRINTS E-class P450 group I signature 432 455 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma15g01410 490 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 425 434 IPR017972 GO:0005506|GO:0016705
Cma15g01410 490 SUPERFAMILY Cytochrome P450 33 489 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01410 - - - csv:116403724 711.835
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01716 Cma-Chr6:10537402 Cma15g01410 Cma-Chr15:8894565 3.89E-25 dispersed
Cma14g01396 Cma-Chr14:10775020 Cma15g01410 Cma-Chr15:8894565 5.37E-27 dispersed
Cma15g01410 Cma-Chr15:8894565 Cma02g01713 Cma-Chr2:9641402 3.36E-93 dispersed
Cma15g01405 Cma-Chr15:8865390 Cma15g01410 Cma-Chr15:8894565 8.24E-94 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g367 . . . . . . . . . . . Cma15g01410 . Car15g01272 . . Cpe05g00314 . . . . . . . . . . . . . . . Cone12ag0321 . . . . . . . . . . . . . . . . Cmo15g01482 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000969 6 2 3 2 3 2 1 3 3 2 3 2 1 1 1 2 2 11 1 3 2 3 2 3 3 3 0 2 4 4 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01410 Cma_Chr15 FPKM 31.148027 35.015377 0.806797 0.590239 0.699985 1.48883 1.368182 0.192891 0.196163 0.246727