Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01411 ATGGCATCTTCTCGAGTGGCTGGAGGATTAACGCAGTCTTCCTCAAGTTCTGGGATTTTTTTCCAAGGAGATGGGCAGTCCAAGGGTACTATTAAATCTCACTTGGGCTCATCTTATGGAAATTCATCAAATTCAATTCCAGGAGCTGGCCATTCAAATTTTATTCCTGTTTCTGGGGACACGAATAATGGAGCGTTGAATAGTGTGGCTAGCTCAGGACCAAGTGTTGGGGCAAGTTCTTTGGTTACAGATGCCAACTCTGCACTTTCAGGTGGGCCTCACTTGCAGAGAAGTCCAAGCATGAATGCAGAATCATACATGCGATTACCTACATCGCCTATGTCTTTTTCATCAAATAACATGGGTATCTCAGGTGCATCACTCATTGATGCATCTTCTGTAGTGCAGCACAATCCTCAGCAGGATCATAATGCCCCTCAATTGCCACAGACCCAGCCACAGGCCCGACAAGTTTCTCCAGGTGATGCATCACTGTCTAATTCACAAACAGCCCAAGCTTCACTCCCCATGGCTGCACGTGTCTCTGGATCGCTGATGACAGATCCCAACAGTTATTCTCAGTTACAGAAGAAACCACGCTTGGATATTAAGCAGGATGATTTCCTGCAACAGCAGATGCTACAACAGCTACTTCAAAGACAAGATTCCATGCAACTGCAAGGTCGTAATACACCTCAGTTACAAGCAGCATTATTTCAGCAGCAACAGAGATTACGGCAGCAGCAACAAATGTTTCAGTCTTTGCCTCCTTTGCAGAGAGCTCATCTGCAGCAGCAGCAGCAGATACAGTTGAGGCAGCAACTTCAACAGCAAGCAATACAACCTGTGAATGCTATGAAGCGGCCTCATGATGGTGGTGTTTGTGCTCGGCGGCTAATGCAGTACCTATACCATCAACGTCAAAGGCCTGCTGATAATAGTATTGCCTATTGGAGGAAGTTCGTGACAGAATATTATTCCCCTCGTGCAAAGAAAAGATGGTGTTTGTCATTATATAACAATGTTGGTCATCATGCACTTGGTGTTTTCCCTCAAGCAGCCATGGATGCATGGCAGTGTGACATTTGTGGTTCTAAATCTGGACGGGGATTTGAGGCTTCCTTTGAAGTGCTTCCTAGACTAAATGAGATCAAATTTGGCAGTGGAGTAATTGATGAGTTATTGTTCTTGGATATGCCTCGGGAAATCAGATATTCATCTGGAATTATGATGTTAGAATATGGAAAAGCCGTTCAAGAGAGTGTATATGAGCAACTTCGTGTAGTTCGTGAGGGCCAGCTTCGTATCATATTTACACATGAATTGAAGATATTGGCATGGGAATTTTGTGCAAGACGCCATGAAGAACTTCTTCCTCGTAGGCTGGTTGCACCTCAGGTGAATCAGCTGGTTCAGGTGGCACAGAAATGCCAGAGCACTATTGCTGAAGGAGGATCCGATGGGGCTTCTCAGCAGGATTTACAAGCAAATAGTAATATGGTTTTGACTGCTGGGCAGCAGCTTGCAAAGAGCCTGGAGTTGCAGTCACTGAATGATTTGGGGTTCTCTAAAAGATACGTTAGATGCTTGCAGATTTCAGAGGTTGTCAATAGCATGAAAGATTTGATTGATTTCTGTAAGGAGCAGAAAACAGGACCAGTTGAAGGTTTGAAAAGTTATCCTCAGCACGCTACAGCCAAGCTGCAGATGCAAAAAATGCAAGAGATTGAGCAGGTTGCTACTGCTCAGGGTCTGCCAACCGACCGTAACACCCTTAGTAGAATGGTTGCCCTGCATCCTGGACTGGACAGCCAAATGAATAGCCAAAATCAACTAATCGGTAGAGGAGCTTTGAGTGGTTCGGCACAAGCTGCGTTGGCATTGTCTAGCTACCAGAATCTGCTAATGAGACAGAGCTCAATGAATTCAACAAGTTCAAACCCACTCCAGCAGGAGACAACGTCATTCAATAACTCAAACCACCAGAGTCCTTCATCAAGCTTTCATGGGACAACTGCATTATCATCGGCACCAATGCAGAGCTTGCCTGGCAGTGGTCTTTCAAGTCCTAATCTACCACCTCCGCAACAATCTCAGCAATCTCAAGTTCAACAGCAACTGCATCAACGCCCGAACGCCAACAATTTACTTGTGCAAAACCATCCCCAGACTACTACCCATGGGAACAGTAACAATAATCAGGCCATGCAACATCAGATGATCCAGCAACTACTCCAGATATCTAATAACAGTGGGGGAGGGCAACAGCGACCACTTCCTGGATCAAACATGAAAGGAGGAAGCATGACCGGAACTTATACGGGTTTTGGAGGTAGCTCTTCTGTGGTTGCAGCAGGCTCAGCCGATGCATCCGGTAGTAATACCCCTGCCCCAACCCGTAGTAGTAGTTTAAAAAATGCTTCAGCTGGTGATGTATCAGCAGCAGCCGGTTCTCGTTGCAGTGAGTTCAACCAAAGAACTGCAGATTTGCCGCAAAATCTTCATCTGGATGAGGATATAATCCAGGATATAGCCCATGATTTTACAGAAAATGGGTTTTTTAACAGTGATCTTGACGATAATATGTGCTTCGCCTGGAAAGGTTAA 2607 45.34 MASSRVAGGLTQSSSSSGIFFQGDGQSKGTIKSHLGSSYGNSSNSIPGAGHSNFIPVSGDTNNGALNSVASSGPSVGASSLVTDANSALSGGPHLQRSPSMNAESYMRLPTSPMSFSSNNMGISGASLIDASSVVQHNPQQDHNAPQLPQTQPQARQVSPGDASLSNSQTAQASLPMAARVSGSLMTDPNSYSQLQKKPRLDIKQDDFLQQQMLQQLLQRQDSMQLQGRNTPQLQAALFQQQQRLRQQQQMFQSLPPLQRAHLQQQQQIQLRQQLQQQAIQPVNAMKRPHDGGVCARRLMQYLYHQRQRPADNSIAYWRKFVTEYYSPRAKKRWCLSLYNNVGHHALGVFPQAAMDAWQCDICGSKSGRGFEASFEVLPRLNEIKFGSGVIDELLFLDMPREIRYSSGIMMLEYGKAVQESVYEQLRVVREGQLRIIFTHELKILAWEFCARRHEELLPRRLVAPQVNQLVQVAQKCQSTIAEGGSDGASQQDLQANSNMVLTAGQQLAKSLELQSLNDLGFSKRYVRCLQISEVVNSMKDLIDFCKEQKTGPVEGLKSYPQHATAKLQMQKMQEIEQVATAQGLPTDRNTLSRMVALHPGLDSQMNSQNQLIGRGALSGSAQAALALSSYQNLLMRQSSMNSTSSNPLQQETTSFNNSNHQSPSSSFHGTTALSSAPMQSLPGSGLSSPNLPPPQQSQQSQVQQQLHQRPNANNLLVQNHPQTTTHGNSNNNQAMQHQMIQQLLQISNNSGGGQQRPLPGSNMKGGSMTGTYTGFGGSSSVVAAGSADASGSNTPAPTRSSSLKNASAGDVSAAAGSRCSEFNQRTADLPQNLHLDEDIIQDIAHDFTENGFFNSDLDDNMCFAWKG 868
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8900528 8907457 + CmaCh15G014110.1 Cma15g01411 310561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01411 868 MobiDBLite consensus disorder prediction 749 772 - -
Cma15g01411 868 MobiDBLite consensus disorder prediction 785 809 - -
Cma15g01411 868 Pfam LIM-domain binding protein 298 558 IPR029005 -
Cma15g01411 868 MobiDBLite consensus disorder prediction 785 810 - -
Cma15g01411 868 MobiDBLite consensus disorder prediction 135 175 - -
Cma15g01411 868 MobiDBLite consensus disorder prediction 639 708 - -
Cma15g01411 868 PANTHER LIM DOMAIN-BINDING PROTEIN 179 715 IPR029005 -
Cma15g01411 868 PANTHER LIM DOMAIN-BINDING PROTEIN 5 148 IPR029005 -
Cma15g01411 868 PANTHER LIM DOMAIN-BINDING PROTEIN 714 867 IPR029005 -
Cma15g01411 868 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 179 715 - -
Cma15g01411 868 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 5 148 - -
Cma15g01411 868 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 714 867 - -
Cma15g01411 868 MobiDBLite consensus disorder prediction 1 44 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma15g01411 Cma18g01227 CCT
Cma15g01411 Cma16g00145 CCT
Cma15g01411 Cma16g00145 ECH
Cma15g01411 Cma18g01227 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00631 Cma-Chr15:2982340 Cma15g01411 Cma-Chr15:8900528 7.99E-115 dispersed
Cma15g01411 Cma-Chr15:8900528 Cma16g00145 Cma-Chr16:635891 0 dispersed
Cma15g01411 Cma-Chr15:8900528 Cma02g01044 Cma-Chr2:6218305 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01411 - - bhj:120092747 1295.03