Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01418 ATGATGAACAGATTTGGTGTTCTTGTTTCTGTTTCGATTGCAGCTTATGCAATTAGGCAGCTCACAATCAGATCATGGGGCTCATTAATCTGTTCAGAAAATGGAGAACACACAGAGAAGAACCTAAGACGACAGCGAAGAATGTTCCATGGCTTGGATGAAGAACAAGAAGAACAAAAGGGAGCTAATTCAATGAATGATCTTGAAGATGGTGATCATGATCATAGTTTAGATGAACTTCGAGAACATCTACCACAAAACAAAGTGGGTGAAACCCATAAGATTGAAATGGAAAGGTTGCTGAAACAAGTGATGGAATTGGAGGAGAGGAAAGTGAAGCTTGAAGGTGAACTGCTCATGTATGATGGTATCAAGAACAGTGAAATGGATATCATGGAGTTGAAGAAGCAGCTGGAGGCCAAGAATGATGATATCAATAAGAGTAATATCACAATCAGCTCTTTGCAGGCTGAGAGGAAGGAGCTACAAGAAGAGATAGTGAAGGGAGCATTGGTGAAGAAGGAGCTAAAGGAGGCTAAGGGAAAGATTAAGGAGCTGCAAAGGCAGATTCAGGTTGATGCAAACCAAACAAAACAACAGTTATTATTACTTAAACAACAAGTTTCCACTTTGCAGGCAAAAGAGGAAGAGGCCCTCAAGAAAGAAGTAGAACTTTATAAGAAGATGAGAGCGGAGAAGGATTTCGAGGTCGAGATTTCGGAGCTTAAGCGGAAGAATCGAGAGCTTCAACACGAAAACCAGGAACTTACCTCTAAACTAAATCAACTTGAAGGGCTCCAGATGAACAGGTTTAGTGAAGTTGAAGAGTTAGTGTACCTTCGTTGGATCAATGCTTGCTTGAGGTATGAGCTTCGAGATGACAACAAAACACCGTCAGGCGAATCCGCTCATTATCTCAATAAGAACTCAAGTCCAAAGTCAAAAGAGAATGCAAAACAACTCATGTTAGAGTATGCAGGAACAGAAACAGATTCAATTGATAGTTCAAGGAGCAGAAGTAGTAGTAGTTTCAGTGAGAAGCCTAATTTGATCAGAAACAATGGCGAGTCGAGTGGTGTTTCGTTGTTGCCGATGATCGGTTTGAGCCACAGACGGAAGGATTGTTTAGAAGCAGTGTTGGCTGTGAGGGCTGAAACTTTAACTCTCTCAGAAGTCCGCAGATTGCAAGTTTGTTCAAGAAACTCTGTTAACTCTGTTGCAACATCATTCAAACTTATGTCTAAAACAGTTGAAGAAAGTCTAAAACAAAGAACATCATAA 1281 40.59 MMNRFGVLVSVSIAAYAIRQLTIRSWGSLICSENGEHTEKNLRRQRRMFHGLDEEQEEQKGANSMNDLEDGDHDHSLDELREHLPQNKVGETHKIEMERLLKQVMELEERKVKLEGELLMYDGIKNSEMDIMELKKQLEAKNDDINKSNITISSLQAERKELQEEIVKGALVKKELKEAKGKIKELQRQIQVDANQTKQQLLLLKQQVSTLQAKEEEALKKEVELYKKMRAEKDFEVEISELKRKNRELQHENQELTSKLNQLEGLQMNRFSEVEELVYLRWINACLRYELRDDNKTPSGESAHYLNKNSSPKSKENAKQLMLEYAGTETDSIDSSRSRSSSSFSEKPNLIRNNGESSGVSLLPMIGLSHRRKDCLEAVLAVRAETLTLSEVRRLQVCSRNSVNSVATSFKLMSKTVEESLKQRTS 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8956482 8958457 - CmaCh15G014180.1 Cma15g01418 310568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01418 426 Coils Coil 124 165 - -
Cma15g01418 426 Coils Coil 90 117 - -
Cma15g01418 426 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 38 261 IPR040265 -
Cma15g01418 426 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 261 358 IPR040265 -
Cma15g01418 426 MobiDBLite consensus disorder prediction 53 74 - -
Cma15g01418 426 MobiDBLite consensus disorder prediction 300 317 - -
Cma15g01418 426 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 38 261 - -
Cma15g01418 426 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 261 358 - -
Cma15g01418 426 Coils Coil 232 269 - -
Cma15g01418 426 Coils Coil 169 221 - -
Cma15g01418 426 MobiDBLite consensus disorder prediction 294 352 - -
Cma15g01418 426 MobiDBLite consensus disorder prediction 329 352 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma15g01418 Cma18g01050 CCT
Cma15g01418 Cma18g01050 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00748 Cma-Chr8:4497509 Cma15g01418 Cma-Chr15:8956482 1.40E-28 dispersed
Cma15g01418 Cma-Chr15:8956482 Cma18g01050 Cma-Chr18:8736623 2.95E-85 dispersed
Cma15g01418 Cma-Chr15:8956482 Cma04g01541 Cma-Chr4:7809860 6.20E-87 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01418 - - csv:101222579 461.07