Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01419 ATGGCTTCAGATGCTGGTTCGAGGGCGAGTTCAGCTGCCGATTCGTACATTGGAAGCTTGATTAGTTTGACTTCCAAGAGTGAAATTAGATACGAAGGCGTACTCTACAACATCAACACCGATGAGTCGAGTATTGGACTAAGAAATGTGAGATCATTTGGAACAGAAGGAAGAAAGGATGGCCCCCAAGTTCCTCCAAGTGATAAAGTTTTTGAGTACATCTTATTCCGCGGAAGTGATATCAAGGATTTGCAGGTTAAATCTTCTCCACCTGTTCAGCCGTCAGCGCCTATAAATAATGATCCAGCAATTATTCAATCTCACTATCCCCCATCAGTTTCCACAACTACCAGCATGCATTCTGCTGTCAGTGGGTCATTACCCGATCATACTTCTCACACAGCATTTGGATTTCCTCAGTCTAATTTTCAAGGTGGTTTGCCCCCATATCAACCTGGAGGCAACTTGGGGTCATGGGGAGCTTCTCCTCCGCCTCCTCCAAGTGCAAATGGCAGTGGACTTGGGATGCCCATGTATTGGCAAGGGTATTATGGCCCACCTAATGGGCTTCCTCAGTTACATCAACAATCAATAATACGACCTCCTCCAGGTCTGTCAATACCTTCATCTCTGCAACAGTCAATGCAGTTTCCTAACATTAATGCACCTTTACCCACTGGAACTTCAAATCAACCAGAAGTTCCATCTCCCTTGCTCGCTGCTAATAGTAGTGCTCCTAACCTGACCTCCACTGTTGTGCCCCCTCCAACTTTTTCAACAACTTTGCCTATGTTCCCTTTTACTTCTTTTTCTGAAACCTTGCCAAGTTCAGTTGCTAATAAGACAGCTGTTCCTACCCTTTCTGGAGCCCCAGTTAGTGTAAGTTTGCCCCTTGGTCCAATACTATCTTCATTTTCCGGTGGAGATGTTAGTTCTGCCATACCACCAATCACTAATGAACCTAATGCAGTTTCTGGTCCCTCATTACTGTATCAAAATGCGTCTCAGTCAACTTCATCTGTAATTGGAATAGCCAACTCTCGTGCTGAATCTTCTGTACCTTCTCTCGTTACCCCTGGGCAGCTGTTGCAGTCTGGTCCTGTTGCTGTGGTTTCATCTCAATCCTCACGTACAGTGCATGAGGACGTGGAAGTGGTCCAGCCATTATCGTTAGAACCTTCGATGCCAGTGACAACAGAGGCTCAGCCACCAATATTACCACTACCTTTACTATCAAGGCCCGTTCAAAAGGCAAATGGTGGTCATTTTCAGGCTCGCCACTTTTACAGAGGACGTGAAAGAGGAAGAGGATCTGGGAGTTCCCGTCCTGTTACCAAATTTACGGAAGATTTTGATTTCATAGCTATGAATGAGAAATTCAACAAGGATGAAGTGTGGGGAAATCTAGGTAAAGGCAATAAATCTCACCACAAGGATAAGGATGTGGATGGAAATGTCAGTGATGATGATGATGCGGAAGAAGAAGATGAGGGTGAAGTCTCACAGTCTGGGGTTAAGCCTTTGTACAACAAGGATGACTTCTTTGATTCACTCTCTTATAATGCTATTGATAATGATCCTCAAAATGGGCGGACTAGATATTCGGAGCAAGTAAAGATAGACACAGAGGGGGACGAGGTGGCCGAGGTCCTGGACGTGGGGGGTATTTCCGTGGAGGATACCATGGAAGAGGATATGGCTATTATGGGAGGGGGAGGGGGCGGGGACAAGGGCGATCATCATTTAATCGTTCATAATCCAACCAGAGAAGCACCACCAAACAAAATGGAGTTTAGTAGCAAAGAGTTCAAGGTTGGAAAATGTGAGGGCCAAAAGGAAGTGGATGGAGAAACCATGCCATTGGTTCTACAGCCTCCTGAATCAAACAAGGCCAACTTTGATTCCCTCTTATTGGCTCTAAAAAACAACAAAGATTGGTTGGACCAAATGATTATCAAACACAGCGCTGTTTTACTCCGAGGATACGACGTGTCGAAAGCTGAGGAGTTCAACGAGATCGTTGAAGCCTTCGGGTGGGAAGACATTCGATACGTTGGTCCAGCTCCTCGAACTCATATTTATAAGAGGATTTGGACTGCTAATGAAGGACCCCTCTCTGAGTTCATTTACTACCACCATGAGATGGTTTTGATAAAGGAATATCCAAAGAGGGTAATCTTGTACTGTGAGATACCTCCTCCAGAAGGTGGAGAAACGCCATTTGTTCCAAGTTTCAAAGTAACAGAACGAATGGTGAAGGAATTCCCAAAGGAAGTTGAAGAAATGGACAAGAAAGGCTTGAAATATACCTTCACTGCTCTTAGCAACAATGACACTTCCTCTATGAGGGGCAGAGGCTGGGAGGATGCTTTTGGTTCATCAGATCGTTATGAAGCAGAAAAAAGGGCTAATGCGTTGGGGATGGAGGTTGAGTGGCTGCCAAACGGCGCGATGAAGACGATACTGGGACCGAGGTGCCTAACAAAGGTGTTTGATGGAAGGAAACGAAGAAGAATGTGGTTTAACACCATGGTGGGGATGCATGGGAAGGAGCACAGCTCTGCTTTAATGGCGGATGGGATGGAGATTTCAGAACATGTTGTGAAGAGATGCCAGCAGATAATTGAAGAAGAAAGCATCCAATTCAAATGGGAAAAGGGGGATGTTTTGTTTTTGGATAACTATGCTTTGCTCCATGGAAGAAGGCCTTCTCTTCCTCCCAGAAGAGTATTAGTTGCCACCTGCAAGTAG 2751 45.26 MASDAGSRASSAADSYIGSLISLTSKSEIRYEGVLYNINTDESSIGLRNVRSFGTEGRKDGPQVPPSDKVFEYILFRGSDIKDLQVKSSPPVQPSAPINNDPAIIQSHYPPSVSTTTSMHSAVSGSLPDHTSHTAFGFPQSNFQGGLPPYQPGGNLGSWGASPPPPPSANGSGLGMPMYWQGYYGPPNGLPQLHQQSIIRPPPGLSIPSSLQQSMQFPNINAPLPTGTSNQPEVPSPLLAANSSAPNLTSTVVPPPTFSTTLPMFPFTSFSETLPSSVANKTAVPTLSGAPVSVSLPLGPILSSFSGGDVSSAIPPITNEPNAVSGPSLLYQNASQSTSSVIGIANSRAESSVPSLVTPGQLLQSGPVAVVSSQSSRTVHEDVEVVQPLSLEPSMPVTTEAQPPILPLPLLSRPVQKANGGHFQARHFYRGRERGRGSGSSRPVTKFTEDFDFIAMNEKFNKDEVWGNLGKGNKSHHKDKDVDGNVSDDDDAEEEDEGEVSQSGVKPLYNKDDFFDSLSYNAIDNDPQNGRTRYSEQVKIDTEGDEVAEVLDVGGISVEDTMEEDMAIMGGGGGGDKGDHHLIVHNPTREAPPNKMEFSSKEFKVGKCEGQKEVDGETMPLVLQPPESNKANFDSLLLALKNNKDWLDQMIIKHSAVLLRGYDVSKAEEFNEIVEAFGWEDIRYVGPAPRTHIYKRIWTANEGPLSEFIYYHHEMVLIKEYPKRVILYCEIPPPEGGETPFVPSFKVTERMVKEFPKEVEEMDKKGLKYTFTALSNNDTSSMRGRGWEDAFGSSDRYEAEKRANALGMEVEWLPNGAMKTILGPRCLTKVFDGRKRRRMWFNTMVGMHGKEHSSALMADGMEISEHVVKRCQQIIEEESIQFKWEKGDVLFLDNYALLHGRRPSLPPRRVLVATCK 916
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8960673 8969228 - CmaCh15G014190.1 Cma15g01419 310569

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01419 916 MobiDBLite consensus disorder prediction 471 485 - -
Cma15g01419 916 SMART FDF_2 445 547 IPR019050 -
Cma15g01419 916 Pfam FDF domain 446 533 IPR019050 -
Cma15g01419 916 PANTHER PROTEIN DECAPPING 5-LIKE 5 544 - -
Cma15g01419 916 MobiDBLite consensus disorder prediction 112 170 - -
Cma15g01419 916 SUPERFAMILY Sm-like ribonucleoproteins 15 91 IPR010920 -
Cma15g01419 916 Pfam Taurine catabolism dioxygenase TauD, TfdA family 630 912 IPR003819 GO:0016491
Cma15g01419 916 ProSiteProfiles FFD box profile. 507 522 IPR025761 -
Cma15g01419 916 MobiDBLite consensus disorder prediction 112 148 - -
Cma15g01419 916 Gene3D - 599 916 IPR042098 -
Cma15g01419 916 SUPERFAMILY Clavaminate synthase-like 605 915 - -
Cma15g01419 916 ProSiteProfiles DFDF domain profile. 439 475 IPR025762 -
Cma15g01419 916 Pfam Scd6-like Sm domain 16 88 IPR025609 -
Cma15g01419 916 CDD LSm14_N 13 86 IPR025609 -
Cma15g01419 916 Gene3D - 6 91 - -
Cma15g01419 916 MobiDBLite consensus disorder prediction 471 509 - -
Cma15g01419 916 PANTHER SCD6 PROTEIN-RELATED 5 544 - -
Cma15g01419 916 SMART LSM14_2 10 109 IPR025609 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01419 K18749 LSM14, RAP55, SCD6; protein LSM14 - csv:101215778 891.723
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g01419 Cma-Chr15:8960673 Cma18g01050 Cma-Chr18:8736623 2.60E-173 dispersed
Cma04g01995 Cma-Chr4:11985199 Cma15g01419 Cma-Chr15:8960673 0 transposed
Cma15g01419 Cma-Chr15:8960673 Cma04g01543 Cma-Chr4:7822563 1.36E-173 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g248 Blo01g00478 . Bda01g02103 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0478 Cone9ag0490 . Csa05g02075 . . . . . . . Bpe02g02292 Bma01g00149 . . . . . Cma15g01419 . . Cpe13g00030 . Bhi12g00821 . . . . . Lcy10g0876 Cla01g00561 Cam01g0584 Cec01g0576 Cco01g0600 Clacu01g0579 Cmu01g0550 Cre09g1957 Lsi09g00610 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009172 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01419 Cma_Chr15 FPKM 19.04533 20.297878 20.348696 21.115107 21.710255 21.980747 24.13073 19.594215 20.349876 20.364538