Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01420 ATGACGGACACTACGGACGATATCGCTGAGGAAATCTCCTTCCAGAGCTTCGATGATGACTGTAAATTGCTTGGCAACCTTCTTCACGACGTCTTGCAGCGGGAAGTTGGGAGCCTATTCATGGAGAAAGTTGAACGAACTCGAGTCCTCGCTCAGAGCGCTTGCAATATGAGGATCGCTGGCATCGAGGATACGGCAGACATGATTGAGAAGCAGCTTGCATCAGAGTTGTCGAAAATGACTTTAGAGGAAGCCTTCTCTTTGGCTCGTGCATTCAGCCATTCTCTCAATTTGATGGGGATTGCAGAAACTCACCACATGGTTCGTAAGTCGAGAAATCTTGTACTTCTATCAAGATCCTGCGATGAAGTTTTTAATCAGCTTGTGCAGGGCGGAGTCTCTACTGACGAGCTTTACGACAGCGTTTGCAAGCAGGAGGTTGAAATTGTTCTTACAGCACATCCAACTCAAATTAATCGTCGAACTTTGCAGTACAAGCATCTTCGCATTGCACATCTATTGGACTACAATGACAGACCTGACCTTAGTCCTGAAGATCGGGAAATGCTAATTGATGATCTGGTAAGAGAGATAACTTCAATATGGCAGACAGATGAACTTAGACGCCACAAGCCCACACCAGTTGATGAAGCTAGGGCTGGCTTGAGCATTGTGGAACAGTCCCTGTGGAAAGCTGTCCCTTATTATTTACGTCGACTCAGCAATGCCTTAAAGAAGCACACTGGAAGGTCGCTTCCTCTGACTTGCACACCAATAAAATTTGGGTCTTGGATGGGAGGCGATAGGGATGGAAATCCGAATGTCACAGCAAAGGTCACAAGAGAAGTCTCTCTTTTGTCTAGGTGGATGGCTATTGATCTATACATTCGAGAGCTTGATAGCTTACAATTTGAACTTTCCATGAACCGATGCAGCGATGGATTATACAGACTGGCACATGAAATTCTTGAAAAAGAAGCTGTATCTGAAGATGGACACGAGACCTGGAATCAGTCTTCGAGCAAAAGTGAACCGAAGAATCAGGGCCATCAAGCTGCTGCACTTCCAAGACAACTTCCACTTAGGGCTGATCTGCCTTCATGCACGGATTGCAATGATGGTGAATCCAGGTATTCTAGAGTAGAATTTCCGAGGACTGATCATCCATCATCAAATAATGAGGAAACTTCGGTTCGAAATACACATGCATCCATATCAAATGGAACTTCACCTAGTGCAAGTGCATTTCAGTCCAATTCTTTGTCTCGTACTGCCTCTTTCAACTCAACTCAACTCCTTGCTCAGAGGAAACTGTTCGCAGAATCTCAGATTGGGAGGTCGAGTTTTCAGAAGCTTTTAGAACCAAAGCTTCCTGTGCGTCCTGGAATTGCACCCTACCGCGTTGTGTTGGGTAGTGTAAAAGACAAGCTAGTGAAAACACGGAGGAGGCTGGAGCTGCTTCTTGAGGATCTTCCTTGTGAACAGGATCCTTCGGATTACTATGAAACTGCAGATCAACTCTTGGAGCCGCTGCTTCTATGCTATGAGTCTCTGCAATCATGTGGATCTGTGGTGCTTGCTGATGGTCGATTAGTTGATCTGATTAGAAGAGTTGCTACATTTGGTATGGTATTAATGAAGCTGGATTTACGTCAGGAATCTGGTAGACACACTGACACTCTGGACGCCATTACAACGTATTTGGACATGGGTTCATATAGTGACTGGGATGAAGAAAGGAAGTTGGAATTTCTAACAAGAGAGCTGAAGGGGAAACGACCACTGGTTCCTCCAACTATTGAGGTTCCTCCTGATGTTCAAGAAGTTTTGAACACCTTTCGTGTTGCTGCTGAGCTAGGGAGTGAATCACTTGGTGCTTATGTGATCTCTATGGCCTCAAATGCAAGTGACGTCCTCGCCGTGGAACTTCTGCAGAAAGATGCACGACTTTCAGTTAGTGGCGAGTTAGGACGACCATGTCCTGGTGGAACGTTGCGGGTGGTTCCTCTGTTTGAAACTGTGGACGACTTGAGGAAAGCAGGATCATCGATCAGGAAACTGTTATCTATTGATTGGTACCGAGAACACATCATAAGGAACCATAATGGGCATCAAGAGGTCATGGTAGGTTATTCTGACTCTGGCAAAGATGCTGGGCGCTTCACTGCTGCATGGGAACTTTACAAAGCTCAAGAAGATGTTGTGGCTGCATGCAACGAGTATGGTATTAAAGTTACCCTGTTCCATGGGCGTGGAGGGAGCGTCGGTCGTGGGGGTGGGCCAACGTATCTGGCCATTCAATCCCAGCCTCCAGGTTCGGTAATGGGTACTTTACGATCAACCGAGCAAGGGGAGATGGTGCAGGCCAAGTTCGGATTGCCTCAGACTGCTGTTAGACAGCTAGAGATATATACCACGGCCGTACTCCTTTCAACCCTACGTCCACCACTTCCACCTCGAGAAGCAAAATGGCGTAATCTCATGGAGGAGATCTCAAAAATTAGTTGTGAGAACTACCGGAGCATGGTATATGAAAATCCAGAATTCATTTCTTACTTCAATGAAGCCACTCCTCAGGCGGAGCTTGGCTTCCTTAACATTGGAAGCCGCCCAACAAGGAGAAAGACCTCTGTTGGTATCGGGCATCTTCGAGCTATACCATGGGTTTTTGCTTGGACACAAACTAGATCTGTTCTTCCAGCTTGGCTTGGGGTTGGGGCAGGTTTAAAGGGTGTATGTGAAAAGGGTCACACTCAAGACTTGAAAGCAATGTACTCAGAATGGCCTTTCTTCCAGAGCACCCTAGACCTTATAGAGATGGTTTTAGGAAAAGCTGATACTCACATCGCAAAGCATTATGATGAAGTTCTTGTCTCGGAGAGTCGGCGTGAAATCGGCTCTATATTGAGGAAGGAACTGGTGGAGACTGAGAAATATGTTTTGGTAGTTAGCAGGCACGGGAAACTATCTGAAAATAATCGGAGTTTGAGAAAGCTGATCGAACGCAGACTCCATTATCTTAATCCTCTGAACCTGCTGCAAGTTGAGATATTAAAAAGGCTGAGATGTGATGCAGAGAACAAGAAACTAAGAGATGCATTGCTTATTACTATTAATGGGATCGCAGCTGGAATGAGGAACACAGGTTAA 3150 45.81 MTDTTDDIAEEISFQSFDDDCKLLGNLLHDVLQREVGSLFMEKVERTRVLAQSACNMRIAGIEDTADMIEKQLASELSKMTLEEAFSLARAFSHSLNLMGIAETHHMVRKSRNLVLLSRSCDEVFNQLVQGGVSTDELYDSVCKQEVEIVLTAHPTQINRRTLQYKHLRIAHLLDYNDRPDLSPEDREMLIDDLVREITSIWQTDELRRHKPTPVDEARAGLSIVEQSLWKAVPYYLRRLSNALKKHTGRSLPLTCTPIKFGSWMGGDRDGNPNVTAKVTREVSLLSRWMAIDLYIRELDSLQFELSMNRCSDGLYRLAHEILEKEAVSEDGHETWNQSSSKSEPKNQGHQAAALPRQLPLRADLPSCTDCNDGESRYSRVEFPRTDHPSSNNEETSVRNTHASISNGTSPSASAFQSNSLSRTASFNSTQLLAQRKLFAESQIGRSSFQKLLEPKLPVRPGIAPYRVVLGSVKDKLVKTRRRLELLLEDLPCEQDPSDYYETADQLLEPLLLCYESLQSCGSVVLADGRLVDLIRRVATFGMVLMKLDLRQESGRHTDTLDAITTYLDMGSYSDWDEERKLEFLTRELKGKRPLVPPTIEVPPDVQEVLNTFRVAAELGSESLGAYVISMASNASDVLAVELLQKDARLSVSGELGRPCPGGTLRVVPLFETVDDLRKAGSSIRKLLSIDWYREHIIRNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEYGIKVTLFHGRGGSVGRGGGPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLSTLRPPLPPREAKWRNLMEEISKISCENYRSMVYENPEFISYFNEATPQAELGFLNIGSRPTRRKTSVGIGHLRAIPWVFAWTQTRSVLPAWLGVGAGLKGVCEKGHTQDLKAMYSEWPFFQSTLDLIEMVLGKADTHIAKHYDEVLVSESRREIGSILRKELVETEKYVLVVSRHGKLSENNRSLRKLIERRLHYLNPLNLLQVEILKRLRCDAENKKLRDALLITINGIAAGMRNTG 1049
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8977066 8988480 + CmaCh15G014200.1 Cma15g01420 310570

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01420 1049 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 150 161 IPR018129 -
Cma15g01420 1049 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 17 1049 IPR015813 GO:0003824
Cma15g01420 1049 Pfam Phosphoenolpyruvate carboxylase 19 329 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cma15g01420 1049 Pfam Phosphoenolpyruvate carboxylase 434 1049 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cma15g01420 1049 MobiDBLite consensus disorder prediction 329 359 - -
Cma15g01420 1049 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 707 719 IPR033129 -
Cma15g01420 1049 Gene3D Phosphoenolpyruvate/pyruvate domain 417 543 - -
Cma15g01420 1049 Gene3D Phosphoenolpyruvate/pyruvate domain 289 365 - -
Cma15g01420 1049 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 8 1049 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cma15g01420 1049 MobiDBLite consensus disorder prediction 390 417 - -
Cma15g01420 1049 MobiDBLite consensus disorder prediction 333 348 - -
Cma15g01420 1049 Hamap Phosphoenolpyruvate carboxylase [ppc]. 9 1049 IPR022805 GO:0006099|GO:0008964|GO:0015977
Cma15g01420 1049 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 4 8 1049 - -
Cma15g01420 1049 MobiDBLite consensus disorder prediction 376 417 - -
Cma15g01420 1049 PRINTS Phosphoenolpyruvate carboxylase signature 149 162 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cma15g01420 1049 PRINTS Phosphoenolpyruvate carboxylase signature 202 218 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cma15g01420 1049 PRINTS Phosphoenolpyruvate carboxylase signature 261 276 IPR021135 GO:0006099|GO:0008964|GO:0015977
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01420 K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] - csv:101216256 1901.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01889 Cma-Chr11:12514561 Cma15g01420 Cma-Chr15:8977066 5.32E-51 dispersed
Cma15g01420 Cma-Chr15:8977066 Cma19g01025 Cma-Chr19:8770185 8.29E-52 dispersed
Cma15g01420 Cma-Chr15:8977066 Cma01g01246 Cma-Chr1:8976735 6.87E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g241 . Blo16g01045 . Bda11g01124 Bpe13g01321 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g02069 . . . . . Bda11g01124 . . . Bma06g00779 . . . . Cma15g01420 . Car15g01282 Cpe13g00027 . Bhi12g00828 . . . . . Lcy10g0852 Cla01g00567 Cam01g0590 Cec01g0582 Cco01g0606 Clacu01g0585 Cmu01g0556 Cre09g1951 Lsi09g00615 . Chy09g00939 Cme09g01467
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008238 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01420 Cma_Chr15 FPKM 4.969069 5.944436 77.747063 78.425476 43.352207 44.912571 42.135544 21.146309 19.81031 21.487114