Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01421 ATGATGCCACCGGAACAAGATACAACCGCCGCCGCCCCCACCACTCCAACCTCCCATCCCCACCCCGACGTCCTCATCCACGCCGTCCCCTCCGCCACCGACACATTCTCCATTCTCCGTCATTCCCTCTTCCCTCTTACCCTCAAGTTTGAAGACGTCTCCTACACCATCAAAACCCATTCCACTAAGACCAGCGGCTGTTTATGGAGGAATCACTCCCAACCCAACACTACACGCACCATATTGAATGGTGTTAGCGGCGTGGTTCGCCCGGGGGAGCTTCTCGCAATGCTGGGCACCTCCGGCAGCGGCAAAACCACTCTTCTAACTGCCCTCGCTGCCCGCTTGCCTGGAAAAATCTCCGGCGCCGTTACCTTTAACGACAAACCCTTCTCCAGCTCCATTAAGCGCAAAATCGGCTTTGTTTCCCAAGACGATGTTCTCTACCCTCATCTCACCGTCCTTGAGACCCTTACCTACGCCGCCATGCTCAGGCTGCCCAAGGAGTTGTCACAAGACGACAAGGTTGCGCAGGCGGAGATCATCATTGCGGAGCTCGGTCTCACTCGCTGCCGGAATAGTATAATCGGTGGGGGGCTTCTCCGGGGGATCTCCGGCGGGGAGAGGAAACGGGTTAGCATTGGTCACGAGATGATTGTGAACCCCAGCTTGCTTTTCTTGGATGAGCCTACTTCTGGGTTGGATTCCACCACGGCCCAGCGGATTGTCGCTACCTTGAGGGGACTGGCTCGTGGCGGTCGGACTCTGGTTATGACCATTCATCAGCCTTCGAGTCGGTTGTATAGGATGTTTGATAAGGTGCTAGTGCTGTCCGATGGCTGCCCTATTTACAGCGGCGACGCCGGTCTAGTCATGGGTTATTTTGAGTCCATTGGATATGTTCCTCCCTTCAACCTCATGAACCCAGCTGATTTTCTCCTCGACCTTGCCAATGGCATAGCGCCAGATTCAGCTCGCGAGGATCAAGTGGACCATTTCCATGGCGGATTGGACACTCAAGACGATCAAAATTCCATCAAGCACTCTTTAATTGCTTTATTCAGAAAGAACATTTACCCTGAAATCAAAGCAGAGATTCTTGCCAAAACGAAGATCTCCACGGTTGATTCAAGAATGGATTCCCCACAAGGAAGAGAAAATCAATGGACGACGAGCTGGTGGGAGCAGTTTAGGATATTACTGAAAAGGGGATTAAGAGAAAGGAGACACGAATCGTATTCTGGGCTGAGGATTTTCCAGGTTATGTCGGTTTCGTTTCTTTCAGGGCTTTTATGGTGGCATTCGGATCCTTCGCATATACAGGATCAAGTTGGTTTAATCTTCTTCTTCTCCATCTTCTGGGGGTTCTTCCCACTGTTCAACGCCATCTTCGCATTCCCAATGGAGCGGCCAATGCTAAACAAAGAGCGCTCCTCTGGGATGTACCGTCTGTCCTCCTACTACATGGCTCGAACAGCAGGGGATTTGCCAATGGAGCTGGTTCTTCCCACCATTTTCGTGACAGTGACGTACTGGATGGGGGGTTTGAAGCCGTCACTGCTCCCATTTCTGCTGACCCTTTTGAGTGTTCTGTTGAACGTGCTGGTGTCGCAGGGTCTAGGCCTGGCCCTAGGCGCGATTCTGATGGAGGTGAAGCAGGCTACCACGCTGGCGTCCGTGACCATGCTGGTGTTTCTTCTGGCGGGTGGGTATTACATTCAGCACATTCCTCCATTTATCTCGTGGCTCAAGTATGCGTCCTTTAGCCATTACTGCTACCGGGTTCTGGTGGGGATTCAGTACAATGTAAATGAGGTGTACCCCTGTGGGTTTGGGGTGCAGCGTTACTGCAAGGTGGGGGACTTTCCTGCTGTTAAGTGCTTGGGGATTGGGAATCCGTGGGGGGATGTGGCTGCTTTGGTGCTCATGTTGGTTGGGTATAGGGTTTTGGCTTTTCTAGCTTTGAAGATGGGACAGCCTCACTGA 1986 52.47 MMPPEQDTTAAAPTTPTSHPHPDVLIHAVPSATDTFSILRHSLFPLTLKFEDVSYTIKTHSTKTSGCLWRNHSQPNTTRTILNGVSGVVRPGELLAMLGTSGSGKTTLLTALAARLPGKISGAVTFNDKPFSSSIKRKIGFVSQDDVLYPHLTVLETLTYAAMLRLPKELSQDDKVAQAEIIIAELGLTRCRNSIIGGGLLRGISGGERKRVSIGHEMIVNPSLLFLDEPTSGLDSTTAQRIVATLRGLARGGRTLVMTIHQPSSRLYRMFDKVLVLSDGCPIYSGDAGLVMGYFESIGYVPPFNLMNPADFLLDLANGIAPDSAREDQVDHFHGGLDTQDDQNSIKHSLIALFRKNIYPEIKAEILAKTKISTVDSRMDSPQGRENQWTTSWWEQFRILLKRGLRERRHESYSGLRIFQVMSVSFLSGLLWWHSDPSHIQDQVGLIFFFSIFWGFFPLFNAIFAFPMERPMLNKERSSGMYRLSSYYMARTAGDLPMELVLPTIFVTVTYWMGGLKPSLLPFLLTLLSVLLNVLVSQGLGLALGAILMEVKQATTLASVTMLVFLLAGGYYIQHIPPFISWLKYASFSHYCYRVLVGIQYNVNEVYPCGFGVQRYCKVGDFPAVKCLGIGNPWGDVAALVLMLVGYRVLAFLALKMGQPH 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8992647 8995992 + CmaCh15G014210.1 Cma15g01421 310571

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01421 661 Pfam ABC transporter 82 232 IPR003439 GO:0005524
Cma15g01421 661 Pfam ABC-2 type transporter 395 601 IPR013525 GO:0016020|GO:0140359
Cma15g01421 661 Pfam ABC-2 type transporter 261 326 IPR043926 GO:0140359
Cma15g01421 661 Gene3D - 70 296 IPR027417 -
Cma15g01421 661 SMART AAA_5 91 281 IPR003593 -
Cma15g01421 661 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 299 IPR027417 -
Cma15g01421 661 MobiDBLite consensus disorder prediction 1 22 - -
Cma15g01421 661 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 28 658 - -
Cma15g01421 661 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 48 304 IPR003439 GO:0005524
Cma15g01421 661 PANTHER ABC TRANSPORTER G FAMILY MEMBER 21 28 658 - -
Cma15g01421 661 CDD ABCG_EPDR 45 286 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01421 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - csv:101209031 1023.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00602 Cma-Chr4:3067272 Cma15g01421 Cma-Chr15:8992647 0 dispersed
Cma11g01609 Cma-Chr11:10538470 Cma15g01421 Cma-Chr15:8992647 1.75E-09 dispersed
Cma15g01421 Cma-Chr15:8992647 Cma16g00503 Cma-Chr16:2563264 0 dispersed
Cma15g01421 Cma-Chr15:8992647 Cma04g01547 Cma-Chr4:7841951 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g240 . Blo16g01044 . . Bpe13g01320 . . . Cmo04g01619 . . . Car04g01598 . . . Cpe01g01375 . . . . . . . . . . . . . . Cone13ag0868 . Cone6ag0480 . . . . . . . . . . . . Bma06g00780 . . . . Cma15g01421 . . Cpe13g00026 . Bhi12g01423 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001139 3 3 3 3 3 2 2 2 2 2 2 2 4 2 2 4 2 5 4 2 2 2 2 3 3 1 3 3 3 3 79
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01421 Cma_Chr15 FPKM 5.828825 5.524704 74.615685 75.45919 2.001538 1.856416 1.649565 43.973858 45.827576 43.846264