Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01424 ATGGCTGTCAATTCCTCGACCCATCTCGCTCCTCCGCCGCTTCGTTCGCTGCCTCGTTCCTCCTTCGCTTTCTTTTCTCGCATCTTCTTGCACCCTGTTTCGCCCACTGGCTTCCCTAGGCGGAGCCTCGTCTCAGTTCGTGCTCAGGCGCCGACTCCCGATGGCTATGGATCCAAGCAGCCGCTCCGTTTGGGGGAATCTGGACCTTTGATCGAGTCCACTGGTTCGCCGTCGTCGTCATCGGTTATCGATTTCCTTACATTGTGCCATCGGCTTAAGACTACGAAGAGAAAGGGCTGGATCAATCATGGAATAAATGGTCCCGAATCAATTGCTGATCATATGTACCGCATGGCTTTGATGAGTTTGATAGCCGGTGATCTTCCAGGAGTGAATAGAGAAAGGTGTATCAAGATAGCTCTTGTGCATGATATTGCTGAAGCTATTGTTGGAGATATTACGCCATCTGATGGTGTGCCGAAAGAAGAAAAGAGCAGAAGAGAGTCAGCAGCTTTAAATGAAATGTGCCAACTTCTTGGTGGAGGCATGAGAGCTGAAGAGATCAAAGAACTTTGGACCGAGTACGAAAACAATTCTTCATTGGAGGCTAATCTTGTGAAGGACTTCGATAAAGTTGAATTGATCCTTCAAGCATTTGAATATGAAATAGAACATGGGAGGGCGCTTGATGAGTTCTTCCATTCAACAGCTGGAAAGTTTCAGACTGATGTAGGAAAGAGTTGGGCAGCTGAGGTATTGTCCAGAAGGAATTCAAGATTGACAAACAGACATAATTGA 798 46.99 MAVNSSTHLAPPPLRSLPRSSFAFFSRIFLHPVSPTGFPRRSLVSVRAQAPTPDGYGSKQPLRLGESGPLIESTGSPSSSSVIDFLTLCHRLKTTKRKGWINHGINGPESIADHMYRMALMSLIAGDLPGVNRERCIKIALVHDIAEAIVGDITPSDGVPKEEKSRRESAALNEMCQLLGGGMRAEEIKELWTEYENNSSLEANLVKDFDKVELILQAFEYEIEHGRALDEFFHSTAGKFQTDVGKSWAAEVLSRRNSRLTNRHN 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9007798 9010675 - CmaCh15G014240.1 Cma15g01424 310574

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01424 265 PANTHER UNCHARACTERIZED 3 264 IPR039356 GO:0002953
Cma15g01424 265 Pfam HD domain 89 246 IPR006674 -
Cma15g01424 265 Gene3D Hypothetical protein af1432 72 265 - -
Cma15g01424 265 ProSiteProfiles HD domain profile. 111 215 IPR006674 -
Cma15g01424 265 SUPERFAMILY HD-domain/PDEase-like 80 249 - -
Cma15g01424 265 SMART hd_13 107 224 IPR003607 -
Cma15g01424 265 MobiDBLite consensus disorder prediction 49 79 - -
Cma15g01424 265 PANTHER METAL-DEPENDENT PHOSPHOHYDROLASE 3 264 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01424 K07023 YGK1, HDDC2; 5'-deoxynucleotidase [EC:3.1.3.89] - csv:101206032 467.618
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01014 Cma-Chr5:8138808 Cma15g01424 Cma-Chr15:9007798 6.43E-94 dispersed
Cma12g00833 Cma-Chr12:6169012 Cma15g01424 Cma-Chr15:9007798 5.22E-92 dispersed
Cma15g01424 Cma-Chr15:9007798 Cma04g00966 Cma-Chr4:4955747 7.90E-157 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g215 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma15g01424 . Car15g01285 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001138 3 2 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 1 2 3 6 4 79
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01424 Cma_Chr15 FPKM 15.157803 15.30352 18.260086 19.720634 38.663662 36.067059 38.294376 14.137657 15.822062 12.971945