Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00003 ATGCTTTCTGCAACTGTTTTTGGCCACCACCTCACCTGGATCAACTCTGCTACACTGCCGGTTATCATTGTCAGTTCGTTCAGATTCCAGAATCGAGCTGTACCCGTACACTTCTCCCTCTCCGCAAACATTTCCGTCGGCAATGACATTAGAGGTGACAGAAACAGACATTCAATCCACCTTGATAGTCTCAGAGCGCTGGAATGGGATAAACTCTGTGATTCCGTTGCTTCCTTCGCCCGCACTTCACTGGGCCGTCAAGCTATCAAGGCCCAACTTTGGTCTTTGAACCGGACATATGAAGAAAGCTTGAGACTTTTGGATGAGACTAATGCGGCAGTAGAAATGCACAAGCATGGTGGCTGCAGCTTGGATTTAAGTGGCGTCGACCTTCGGCTGGTGAAATCTGCAATGGAACATGCTCAAAGGAGTCTTCCAATGGATGGAAATGAAGCAGTTGCTATTGTAGCTCTTCTACAGTTTGCTGATATGTTGCAATTTAATTTGAAAACTGCAATCAAAGAAGATGCGGATTGGTCTACACGTTTTATGCCCCTAACAAAAGTGATAATGGGAATGGTTGTAAATCAATCATTGATTAAACTGATACTGAATGTTGTAGATGAAGATGGCTCAGTCAAAGATTCTGCGAGTTCTGCCTTAAGGCAATCTCGAGATCAAGTTCGAAAGCTTGAAAAAAAGCTATGTCAGTTAATGGACAGCCTAGTTAGGAACGCAAAGAGTGGAACATCCTTTATGGAAGTAGGAATTGTTGATGGAAGGTGGTGTATAAAGTCAGAGGGTGTTCAATTGATGGATGTTAAGGGTCTCCTGTTATCCAGTGCTGCAGGGATTGGTACCATCCTAGAGCCACTCTCTGCTGTTCCTTTAAATGATGAGTTGCAACAAGCAAGGGCAGCAGTGGCAAAAGCGGAGGAAGATGTTCTCTTTATGCTAACTGAAAAAGTGAAAATGGATTTTGAAGATATTAATAAACTCATTGGCTGTATAATTGAATTGGATGTGGTCAATGCGCGAGCATCTTATGGTCTTTCATTTGGGGGGGCATGTCCCAATTTAATCTTACCAGGTGGGTGCAACTCTTCTATTGCTAATGTCTACTTATCAGGGGACCAAATATCTGAGGCATCACACCCAAAGGAGAACAAATGGGTCCTCTATTTACCCAATGCCCATCACCCTTTACTAACTCAGCAATATAGAGAAAGTTTGGAAAATGCCAAGAGGGATGTTCGAAATGCTGTTACTGAGATAGGGAGAAAACTTCCTGGGGGTAATATGTCATGGAAAGAAAAGGAAGTTGCCGATATTTCATTATTAAAAATGAAGGTTGAACAATTGGAGCAAGCTCGTCCTGTTTCGGTTGATTTTGCAATATCTCACAGAATTCGAGTTTTAGTTATAACTGGCCCTAATACTGGGGGTAAGACAGTTTGTTTGAAGACCATTGGATTGGCAGCCATGATGGCGAAATCAGGGCTTCATGTTTTAGCTTCAGAGTCTGTACAAATCCCTTGGTTTGATTCTGTTCTTGCTGATATCGGTGATGAACAATCCCTAACCCAATCTTTGTCCACCTTTTCTGGCCATTTGAGGAAAATAAGTGAGATACAGTCAGTTTCAACTAGTCAGTCGTTGGTACTACTGGATGAAGTTGGTGCAGGGACCAATCCTCTGGAGGGAGCCGCACTTGGGATGTCACTGCTGGAATCTTTTGCTAAATGTGGAGCTGCATTGACAATCGCAACTACACATCATGGAGAGCTTAAAACCCTAAAATATAGCAATGAGGTCTTTGAAAACGCGTGTATGGAATTTGATGAGGTGAACCTAAAGCCAACTTACAAGATTCTCTGGGGAGTACCAGGGTACCAGCTGGGGGCTAAGGGCTACAAGGGGACCCTAAATCTCCAAAGGATTTTTGTAAACTGGCTAGGAAAGCACGGGCATGCGTTTGAAAAGGACGGTGAAGTGGGTTTCACGAAAATCGCCCACTCCTTTCAAGGTTCCACACTCCCCGGTCTACCAAATTATAAAGGACGTTCAAATGCTATTAATATAGCTGAAAGGTTAGGGGTGCCTAGTTCTGTTGTAGATGATGCTCGGGAACATTATGGTGCGGCAAGTGCACAGATAGATGAGGTCATACTCGATATGGAATGTACAAAGAAAAAGTTTGGGGACCTCTTACAAGAAGCTCAAAATAATTTGACGGACTCGAAGAATCTTTACGAAAAGTTGTTGCTTGCTAGAAGAAACATTATTGAACATGGCAGACATCAGAGGCTTAGAAAAGTGCAAGAGGTATCCCGGGCAGCAGCAACGGCTCGTTCCAACCTTCACAGAAAAGTACGAGAACTGCGTGCGTCCGCAATTGAATTCTCCCCGCCCTCTGCCATTGATAGTAGGCAACGTGCAGTAAAAAACCCTAATACGCTAGATACAACAGGACAAAAGAATTCGATGGCATTGGATACGCATCTCTCTTCAACCGGCGACATCAATCAGCCACGATCAGAGGAGCCTGGGTTTCCCACTGTTGGTGATATTGTGTACGTTTCTTCCTTTGGAAAGAAAGCGACAGTTTTAGGTGTAGAGCCATCAAAAGACGAAGTAACCGTTCGAGTTGGTAGCATAAAGTTGAAGCTGAAGTTCACCGACATAATGAGATAA 2694 43.65 MLSATVFGHHLTWINSATLPVIIVSSFRFQNRAVPVHFSLSANISVGNDIRGDRNRHSIHLDSLRALEWDKLCDSVASFARTSLGRQAIKAQLWSLNRTYEESLRLLDETNAAVEMHKHGGCSLDLSGVDLRLVKSAMEHAQRSLPMDGNEAVAIVALLQFADMLQFNLKTAIKEDADWSTRFMPLTKVIMGMVVNQSLIKLILNVVDEDGSVKDSASSALRQSRDQVRKLEKKLCQLMDSLVRNAKSGTSFMEVGIVDGRWCIKSEGVQLMDVKGLLLSSAAGIGTILEPLSAVPLNDELQQARAAVAKAEEDVLFMLTEKVKMDFEDINKLIGCIIELDVVNARASYGLSFGGACPNLILPGGCNSSIANVYLSGDQISEASHPKENKWVLYLPNAHHPLLTQQYRESLENAKRDVRNAVTEIGRKLPGGNMSWKEKEVADISLLKMKVEQLEQARPVSVDFAISHRIRVLVITGPNTGGKTVCLKTIGLAAMMAKSGLHVLASESVQIPWFDSVLADIGDEQSLTQSLSTFSGHLRKISEIQSVSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAKCGAALTIATTHHGELKTLKYSNEVFENACMEFDEVNLKPTYKILWGVPGYQLGAKGYKGTLNLQRIFVNWLGKHGHAFEKDGEVGFTKIAHSFQGSTLPGLPNYKGRSNAINIAERLGVPSSVVDDAREHYGAASAQIDEVILDMECTKKKFGDLLQEAQNNLTDSKNLYEKLLLARRNIIEHGRHQRLRKVQEVSRAAATARSNLHRKVRELRASAIEFSPPSAIDSRQRAVKNPNTLDTTGQKNSMALDTHLSSTGDINQPRSEEPGFPTVGDIVYVSSFGKKATVLGVEPSKDEVTVRVGSIKLKLKFTDIMR 897
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 22726 47630 - CmaCh16G000030.1 Cma16g00003 310601

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00003 897 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS, TYPE 2 43 894 - -
Cma16g00003 897 SMART DNAend 67 406 IPR007696 GO:0005524|GO:0006298|GO:0030983
Cma16g00003 897 Coils Coil 214 234 - -
Cma16g00003 897 Coils Coil 294 321 - -
Cma16g00003 897 Coils Coil 737 757 - -
Cma16g00003 897 Gene3D - 662 798 IPR027417 -
Cma16g00003 897 Gene3D - 437 639 IPR027417 -
Cma16g00003 897 Pfam MutS2 and Smr-associated SH3 domain 854 895 IPR046893 -
Cma16g00003 897 ProSitePatterns DNA mismatch repair proteins mutS family signature. 552 568 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cma16g00003 897 SUPERFAMILY DNA repair protein MutS, domain III 185 351 IPR036187 -
Cma16g00003 897 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 463 634 IPR027417 -
Cma16g00003 897 Coils Coil 437 457 - -
Cma16g00003 897 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 43 894 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Cma16g00003 897 Coils Coil 404 424 - -
Cma16g00003 897 PIRSF MutS_YshD 681 897 IPR005747 GO:0004519|GO:0016887|GO:0030983|GO:0045910
Cma16g00003 897 PIRSF MutS_YshD 57 632 IPR005747 GO:0004519|GO:0016887|GO:0030983|GO:0045910
Cma16g00003 897 SMART mutATP5 470 713 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cma16g00003 897 Pfam MutS domain V 473 617 IPR000432 GO:0005524|GO:0006298|GO:0030983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00003 - - - bhj:120082749 1295.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00003 Cma-Chr16:22726 Cma18g00364 Cma-Chr18:1985815 2.36E-75 dispersed
Cma16g00003 Cma-Chr16:22726 Cma14g01847 Cma-Chr14:13150410 2.60E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g938 . . . . . . . . . . . . . . . . Cpe14g00004 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma16g00003 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002296 1 19 1 1 1 1 1 2 2 1 1 1 1 0 3 1 2 2 1 2 1 1 1 3 4 3 1 1 3 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00003 Cma_Chr16 FPKM 3.045077 3.485276 5.042803 5.599351 8.829596 8.388757 9.838652 8.345522 8.456936 8.678953