Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00012 ATGGGCGAAGAAGCTGTTCAGATGCAGCAGCAGCAGCAGGAAGAAGCAAAGGTAGAGGAGATGAAATTGGAGGAAGCCAAGCCTTGTCCTTGTCCTCCGATCGTGTTGTTGGTGGATCTTCATTGCAGTGGGTGTGCAAAGAAAATAGAAAAGTGTATTATGAGAATCAGAGGAGTGGAAGGGGTGAGCATTGACATGGCGAAAAATGAAGTAACCATAAAAGGAATAGTAGACCCAGATGCAGTTTGCGCCAAAATCACCACCAAGACCAAGAGGGTAGCCGAAGTGTTGTCCCCATCGCCGCCGCTGCCTGAGGGTGAACCCAGCCCCCACCTAATTGTTAACTCCCAGTTGAAGGTGGTGGAATTGAACGTCAACATGCACTGCGACGCCTGTGCTCACCAGCTCAAGAAGAAGATACTCAAAATGAGAGGAGTTCAAACAGCATCCACAGAATTGAGCACAGGCAAGGTAGTGGTAACAGGAACCATGGATGGGGATAAGCTCGTGGACTACGTGTACAGACGCACCAAAAAACAAGCCAGAATAGTTCCACAGCCCCAACCCACAGCCACGTCACCCGAACAAGAACCATTAAAACCCGAACAAAGCAAAGAAGAGCAGGCGGCACCACCACCACCACCACCAGAGGAGATAAAGACAGAAGACGCTACTGCACCCCAAGCCCAAGGAACAGACGCGAACAATAATAACAAGGAAGAGGTACAACCAAAAGCGGCGGAAGAGGGTGGGGGGCAGGTGGTGGAAGCGACGGCCGAGACAAAACCAAATGTGGAGGTGGAGGAAGCGAAGGCGGCGGAGGCTGGAGATGAGATGATGGGTGAGGATAATCATGAAAGCATGAAGAGGATGATGTACCAATATTATCAATATCAGCCACTTTACGTTATGGAACGAATTCCACCGCCTCAGCTGTTCAGCGATGAGAATCCCAATGCGTGTTGCGTTCTATAA 975 50.05 MGEEAVQMQQQQQEEAKVEEMKLEEAKPCPCPPIVLLVDLHCSGCAKKIEKCIMRIRGVEGVSIDMAKNEVTIKGIVDPDAVCAKITTKTKRVAEVLSPSPPLPEGEPSPHLIVNSQLKVVELNVNMHCDACAHQLKKKILKMRGVQTASTELSTGKVVVTGTMDGDKLVDYVYRRTKKQARIVPQPQPTATSPEQEPLKPEQSKEEQAAPPPPPPEEIKTEDATAPQAQGTDANNNNKEEVQPKAAEEGGGQVVEATAETKPNVEVEEAKAAEAGDEMMGEDNHESMKRMMYQYYQYQPLYVMERIPPPQLFSDENPNACCVL 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 75525 77478 + CmaCh16G000120.1 Cma16g00012 310610

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00012 324 MobiDBLite consensus disorder prediction 183 198 - -
Cma16g00012 324 MobiDBLite consensus disorder prediction 225 241 - -
Cma16g00012 324 Pfam Heavy-metal-associated domain 124 166 IPR006121 GO:0046872
Cma16g00012 324 Pfam Heavy-metal-associated domain 37 79 IPR006121 GO:0046872
Cma16g00012 324 ProSiteProfiles Heavy-metal-associated domain profile. 126 160 IPR006121 GO:0046872
Cma16g00012 324 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 9 3 323 IPR044258 GO:0046872
Cma16g00012 324 SUPERFAMILY HMA, heavy metal-associated domain 118 175 IPR036163 GO:0046872
Cma16g00012 324 Gene3D - 33 94 - -
Cma16g00012 324 Gene3D - 115 183 - -
Cma16g00012 324 SUPERFAMILY HMA, heavy metal-associated domain 34 89 IPR036163 GO:0046872
Cma16g00012 324 MobiDBLite consensus disorder prediction 262 282 - -
Cma16g00012 324 ProSiteProfiles Heavy-metal-associated domain profile. 32 86 IPR006121 GO:0046872
Cma16g00012 324 CDD HMA 122 162 IPR006121 GO:0046872
Cma16g00012 324 Coils Coil 6 26 - -
Cma16g00012 324 MobiDBLite consensus disorder prediction 180 282 - -
Cma16g00012 324 CDD HMA 40 86 IPR006121 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00012 - - - cmos:111430912 558.14
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma16g00012 Cma18g01346 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00050 Cma-Chr10:183213 Cma16g00012 Cma-Chr16:75525 2.56E-35 dispersed
Cma16g00012 Cma-Chr16:75525 Cma18g00308 Cma-Chr18:1639268 9.60E-31 dispersed
Cma16g00012 Cma-Chr16:75525 Cma18g01346 Cma-Chr18:10222326 5.80E-122 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g949 . . . . . . . . Cmo16g00013 Cmo18g01380 . . . . . . Cpe14g00012 . . . . . . . . . . . . . . Cone1ag1031 Cone5ag0738 . . . . . . . . . . . . . . . . . Cma16g00012 Cma18g01346 Car16g00010 Car18g01258 Cpe09g00006 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013892 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 2 0 2 1 0 0 1 1 1 1 0 1 2 2 2 20
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00012 Cma_Chr16 FPKM 7.390394 6.768393 10.705426 10.054889 6.328046 7.080148 6.521344 6.915651 8.410794 6.638667