Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00016 ATGGCAAACGCTGCCCCAAGATCCGAATTCATGGCCACCTACGATTCCCCGCACCCTCTCTATGCCATGGCCATCTCTTCCGCCCACACCCACTCTCGCAATTTCCCCAATCGCATAGCCCTTGGTAGCTTCATCGAACAGTGCACCAACCGTGTCGACATTGTGTCTTTTGATCCAGATTCCCTCTCCATTCAAACGCATCCTTCTCTCTCCTTCGACCACCCCTACCCACCCACCAAGCTCATGTTCAATCCCAATGCCCTCTCCTCTCTCCGCAACTCCTCCGACATCTTGGCCTCCTCCGGCGACTATCTCCGCCTCTGGCAAGTTGGAGATTCTTCTATCGAACCCCTCTCTGTCCTCAACAACAGCAAAACCAGTGAATTCTGCGCCCCCTTAACTTCCTTCGACTGGAATGAAGTCGAGCCCAAGAGAATTGGAACCTCCAGCATTGATACCACTTGTACTATTTGGGATATTGAGAAGAGCGTGGTTGAAACCCAGTTCATAGCTCACGACAAAGAGGTTTATGACATTGCGTGGGGGGAAGCCCGGGTTTTTGCCTCCGTTTCCGCTGATGGGTCGGTCAGGATTTTCGACTTGAGAGATAAAGAGCACTCCACCATTATATACGAAAGCCCCCAACCCGATTCCCCTTTGCTTAGACTGGCTTGGAACAAGCAGGACCTGCGGTACATGGCCACAATTTTGATGGATAGCAACAAAGTTGTTATTTTGGACATTCGCTCGCCAAGTGTGCCGGTTGCTGAGTTGGAGAGGCATCATTCCAGTGTCAATGCCATTGCCTGGGCTCCACGGAGCTGCAGACATATTTGCTCCGCTGGGGATGACAAACAGGCGCTTATTTGGGAGTTGCCAATGGTTGCAGGCCCGAATGGCATTGATCCAATGTCCATGTATTCTGCTGCACATGAAATTAACCAGTTGCAGTGGTCCGCCGCCCAGCCTGATTGGATTGCTCTGGCATTTTCTAACAAGATGCAGCTTTTGAAAGCAATAGGAGCAGGCTTTGTTGTTTTGAGTTCTAATGCTATGTATCCCTCAACTCTGTTGGAAACCAAGGAAGAACAGCTACCTTCACACACTGCTGATCCTTGCTTCCAACATATACGCCATTTTCAAATTCCTGTTTCCATTCCCATGGCCGCTCTCACCTCTTCTATGCAAACGAATCTCCTCTCCGCCCATTCCTTAACGCCTTCTTCTTCTTCTTCTTCTTCTACAGTTTCTACTTTTCCTACCTCCTTCTCGCTTCCCACCTCTACCAACTCCGCTGTTCTCAAAATTCACGCTCTCTCTTCCCATGCTTCTGCTTTCTTCAACTCCTGCAACCACTGCTTTCGGACCATTGTGATAGCACCTCGCAAACGTCATGCCACAAGATCTTTCAGTATTCGGATGTCCTGGGACGGCCCTCTCTCTTCCGTCAAATTAATTGTTCAAGGCAAAAATTTGGAGTTGACTGAGGCAGTTAAGAAGCACGTGGAAGAGAAGGTTGGCAAGGCAGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTGGATGTCAGACTATCAGTTAGAGGTGGAGAGTTTGGGAAGGGCCCAAGAATTAGAAGATGCGAGGTTACTTTATTCACGAAGAAGCATGGAGTTGTACGAGCAGAGGAAGATGCCGAGACCGTGTATGCAAGCATTGATTTGGTATCTTCCATCATGCAGAGAAAGCTGAGAAAGATTAAAGAGAAAGATTCAGATCATGGCCGGCACATGAAAGGATTTGACAGATCCAAAATAAGAGAACCTGCGCCAATAGTAGTTGAAGATGAGGAAGAGGAAGTTTCTCAGGAAGATGGTGGAGAAGCTATTGATGAGATTGTTCGGACAAAATACTTCGATATGCCGCCTTTAACAGTTGAAGAAGCAATCGAACAACTAAAGAATATTGACCATGATTTCTATGGTTTCCGGAATGAAGAAACTGGTGAGATTAACATCTTATATAAAAGAAAGGATGGAGGATATGGACTAATCATCCCAAAAGAAAATGGCAATGCTGAGAAAATAGAAACTGTGACAGTTGAAGTAGCCAGAGAAGCCTCCTTGGCGGAATGA 2112 47.4 MANAAPRSEFMATYDSPHPLYAMAISSAHTHSRNFPNRIALGSFIEQCTNRVDIVSFDPDSLSIQTHPSLSFDHPYPPTKLMFNPNALSSLRNSSDILASSGDYLRLWQVGDSSIEPLSVLNNSKTSEFCAPLTSFDWNEVEPKRIGTSSIDTTCTIWDIEKSVVETQFIAHDKEVYDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDSPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPSVPVAELERHHSSVNAIAWAPRSCRHICSAGDDKQALIWELPMVAGPNGIDPMSMYSAAHEINQLQWSAAQPDWIALAFSNKMQLLKAIGAGFVVLSSNAMYPSTLLETKEEQLPSHTADPCFQHIRHFQIPVSIPMAALTSSMQTNLLSAHSLTPSSSSSSSTVSTFPTSFSLPTSTNSAVLKIHALSSHASAFFNSCNHCFRTIVIAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGNAEKIETVTVEVAREASLAE 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 92428 100881 + CmaCh16G000160.1 Cma16g00016 310614

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00016 703 SMART WD40_4 114 159 IPR001680 GO:0005515
Cma16g00016 703 SMART WD40_4 251 291 IPR001680 GO:0005515
Cma16g00016 703 SMART WD40_4 162 200 IPR001680 GO:0005515
Cma16g00016 703 SMART WD40_4 65 109 IPR001680 GO:0005515
Cma16g00016 703 SUPERFAMILY WD40 repeat-like 38 298 IPR036322 GO:0005515
Cma16g00016 703 Gene3D - 635 687 IPR038416 -
Cma16g00016 703 Gene3D - 484 587 IPR036567 -
Cma16g00016 703 PANTHER WD REPEAT CONTAINING PROTEIN 6 338 IPR045159 -
Cma16g00016 703 Pfam WD domain, G-beta repeat 169 200 IPR001680 GO:0005515
Cma16g00016 703 Pfam WD domain, G-beta repeat 255 290 IPR001680 GO:0005515
Cma16g00016 703 ProSitePatterns Trp-Asp (WD) repeats signature. 278 292 IPR019775 -
Cma16g00016 703 Pfam Sigma 54 modulation/S30EA ribosomal protein C terminus 623 676 IPR032528 -
Cma16g00016 703 TIGRFAM yfiA: ribosomal subunit interface protein 484 587 IPR003489 GO:0044238
Cma16g00016 703 Pfam Sigma 54 modulation protein / S30EA ribosomal protein 486 582 IPR003489 GO:0044238
Cma16g00016 703 Gene3D - 46 338 IPR015943 GO:0005515
Cma16g00016 703 ProSiteProfiles Trp-Asp (WD) repeats profile. 169 209 IPR001680 GO:0005515
Cma16g00016 703 PANTHER PROTEIN TRANSPARENT TESTA GLABRA 1 6 338 IPR031104 -
Cma16g00016 703 CDD RaiA 484 582 IPR003489 GO:0044238
Cma16g00016 703 ProSiteProfiles Trp-Asp (WD) repeats profile. 258 292 IPR001680 GO:0005515
Cma16g00016 703 SUPERFAMILY Ribosome binding protein Y (YfiA homologue) 484 589 IPR036567 -
Cma16g00016 703 Hamap Ribosome hibernation promoting factor [hpf]. 483 680 IPR034694 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00016 K11805 DCAF7, HAN11; DDB1- and CUL4-associated factor 7 - csv:101218986 617.076
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01569 Cma-Chr11:10211137 Cma16g00016 Cma-Chr16:92428 6.42E-144 dispersed
Cma16g00016 Cma-Chr16:92428 Cma11g00687 Cma-Chr11:3335748 3.64E-10 dispersed
Cma16g00016 Cma-Chr16:92428 Cma14g00784 Cma-Chr14:3911963 2.87E-145 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g958 . . Bda05g00144 . . . Bma10g01322 . Cmo16g00019 . . . . . . . Cpe14g00015 . . . . . . . . . . . . . . Cone1ag1023 Cone5ag0730 . . . . . . Blo07g00313 . . . . . . . . . . Cma16g00016 . Car16g00016 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012302 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00016 Cma_Chr16 FPKM 12.343277 11.069959 30.863379 33.523453 106.15519 94.960602 110.346306 28.670696 29.959705 27.560713