Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00017 ATGGGTTCGTTTGCACATGGAAAGAGCAGCAGCACTACTATCTTCTTGGTTTGTATTTCCGTTTTCACAGCTCTCGATCATCTGTGTACATTACACATTCGTGTGGCTGCCAAAAGCAACGTGTACATCGTTTATATGGGCCAAAAACCACATGATAATGAAGAACTGCTGGTAAAGGCCCATCATGGAGTTCTTGCCTCTGTCCTTGGGAGCCAAGAAGGATCTGTAGATTCCCTGGTATATAGCTACAAATATGGATTTTCTGGTTTTGCAGCAAAGCTTACCATGGCTCAAGCACAAATGATCTCAGAGTTGCCTTCAGTGGTTGAAGTCATACCCAATCGTCTTCACAAGATACAAACAACTAGGAGCTGGGACTACCTTCAACTGTCTCCACGATTTCCAAACTCTCTTCTACGGAAATCAAGAATGGGGAGTGGGGCCATCATTGGTGTCCTTGATACAGGAATCTGGCCCGAGTCTGAAGTTTTCTGTGATGAGGGTCTGGGGCCTGTGCCCTCTAGGTGGAAGGGAATATGCGAGTCAGGAGAGCTCTTCAGTCCAGCCAAGGCTTGTAGCAGAAAGCTAATTGGAGCCCGATATTTCGTCAAGGGGCTGGAAGCTGCATATGGACATCCCTTAAATAATAGTGAGTTCCAAGATTACTTGTCTCCAAGAGATAGATCAGGACATGGCACACATGTCTCTTCAGTCGCTAGTGGCTTCTTTGTGCCCAATGTTAGTTACCATGGGCTAGCTGTTGGAACGGTAAGGGGTGGCGCGCCCCACTCTCGGATTGCTATGTATAAAGTCTGTTGGCAAGTGAATGGAGGCGTATGCGCAGACATAGACATTCTCAAGGCCATCGATCAAGCGATATATGATGGTGTAGATGTACTATCTCTGTCCCTCGGTCCTTCCTTTCCTTCGTACTCTGATGTTGACATGCGCAATGGGATTGCAATTGGCGCATTTCATGCTGTGGCGAAGGGAATAGTTGTTGTTGGTGCAGCAGGAAATTCTGGTCCAGCAGCTTACTCTGTCTCTAATATAGAACCATGGTTATTGACAGTCGCAGCAAGTTCTGTCGATCGTTCATTCTTAGTAGCGATTACATTAGGAAACAACTGGACTACCATGGGACAAGGGATGTTCAGCGGAAAATTGACGAAGTTCATCAATTTAGTGTATCCTGAGGTCTCTGATCTGGATGACGAACGTGCTTGCGAATCTCTATCCTTGAATGATACATGGGCATCTGGAAATGTGGTTCTGTGTTTTGCATCAGATGATTATAATGACAACACACACAATACTTCCTGGTCCGTCAAAAAAGTTGGTGGGTTGGGGCTCATTGTTGCCAAGAATCCTACCAAGGCGGTCGAACCGTTCATAGACAACTTCCCATGCGTTCAAATAAGCCTTGATATTGGAATGCAGATACTCAACTATATCCGCTCCACCAGAAATCCCCAAGTCAAGATTGGTGCTTCAACCACACGTGTTGGTCAGCCATTGTCCACCACTGTGGCCTACTTCTCATCTCGAGGACCTAATTCAGTTGCTCCAGCAATACTGAAGCCAGATATTGCGGCTCCAGGCGTTGCTATTTTAGCTGCTGTTCCTCCGTCTGACCCAAAGAACAGAAATTCTTATGCTTTCATTTCTGGTACATCCATGGCAACTCCTCATGTATCAGCCATTGTTGCCCTTCTCAAAACATTGCACTCTCATTGGTCCCCTGCCGCAATCAAGTCAGCCATTGTTACAACAGCCTGGAGTTCGGATCCATATGGCGCAGTAATATTCGCGGAGGGACGGCCAATGATGTCTGCCCGTCCTTTCGATTTTGGAGGTGGAATAGTGAACCCCAATAAAGCAGTGGACCCTGGTCTTGTATACGACATGGGAATGGCAGATTATATTCAGTATTTCTGTGCGAAGGGCTATAACAACTCCGCCATCTCGGGGATTTCCAAGAGGTCCATATCTTGCCCCAAAAGACGACCATCTATTTTGGATATAAACGTGCCATCCATAACAATACCCAGCCTTACTCACTCGGTAAGTCTCACCAGAACTGTCACAAATGTGGGTGCGATCAATTCCTCATACAAGGCTGCCATTGAGGTCCCGCCCGGCATCACCATAGCCGTAAAGCCTCGTATACTAAAATTCAACCACAAGACGAAGAGCATCTCCTTCACCGTTACTATCTCTTCTAATCAAAGAGTAACAACCGGATACTGTTTTGGAAGCTTGACTTGGCTGGATGGAGTTCATTCCGTTAGGATCCCAGTTTCTATCTCATTTCTTATCCAAAATTGTCTTCATCATCAAGTAACCTCAAATTCAAATGTACATAATCCCTGCAAGCAAGGCCTTCAGATGCATGTTCCAGTCAAAGTTAGGCAGTTTTAA 2421 45.93 MGSFAHGKSSSTTIFLVCISVFTALDHLCTLHIRVAAKSNVYIVYMGQKPHDNEELLVKAHHGVLASVLGSQEGSVDSLVYSYKYGFSGFAAKLTMAQAQMISELPSVVEVIPNRLHKIQTTRSWDYLQLSPRFPNSLLRKSRMGSGAIIGVLDTGIWPESEVFCDEGLGPVPSRWKGICESGELFSPAKACSRKLIGARYFVKGLEAAYGHPLNNSEFQDYLSPRDRSGHGTHVSSVASGFFVPNVSYHGLAVGTVRGGAPHSRIAMYKVCWQVNGGVCADIDILKAIDQAIYDGVDVLSLSLGPSFPSYSDVDMRNGIAIGAFHAVAKGIVVVGAAGNSGPAAYSVSNIEPWLLTVAASSVDRSFLVAITLGNNWTTMGQGMFSGKLTKFINLVYPEVSDLDDERACESLSLNDTWASGNVVLCFASDDYNDNTHNTSWSVKKVGGLGLIVAKNPTKAVEPFIDNFPCVQISLDIGMQILNYIRSTRNPQVKIGASTTRVGQPLSTTVAYFSSRGPNSVAPAILKPDIAAPGVAILAAVPPSDPKNRNSYAFISGTSMATPHVSAIVALLKTLHSHWSPAAIKSAIVTTAWSSDPYGAVIFAEGRPMMSARPFDFGGGIVNPNKAVDPGLVYDMGMADYIQYFCAKGYNNSAISGISKRSISCPKRRPSILDINVPSITIPSLTHSVSLTRTVTNVGAINSSYKAAIEVPPGITIAVKPRILKFNHKTKSISFTVTISSNQRVTTGYCFGSLTWLDGVHSVRIPVSISFLIQNCLHHQVTSNSNVHNPCKQGLQMHVPVKVRQF 806
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 100925 104680 - CmaCh16G000170.1 Cma16g00017 310615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00017 806 Gene3D - 364 502 - -
Cma16g00017 806 Pfam Peptidase inhibitor I9 41 116 IPR010259 -
Cma16g00017 806 CDD PA_subtilisin_like 371 495 - -
Cma16g00017 806 PRINTS Subtilisin serine protease family (S8) signature 145 164 IPR015500 -
Cma16g00017 806 PRINTS Subtilisin serine protease family (S8) signature 227 240 IPR015500 -
Cma16g00017 806 PRINTS Subtilisin serine protease family (S8) signature 556 572 IPR015500 -
Cma16g00017 806 PANTHER PEPTIDASE S8 21 770 - -
Cma16g00017 806 PANTHER SUBTILISIN-LIKE PROTEASE SBT3.1-RELATED 21 770 - -
Cma16g00017 806 ProSiteProfiles Serine proteases, subtilase domain profile. 124 628 - -
Cma16g00017 806 Gene3D - 645 772 - -
Cma16g00017 806 ProSitePatterns Serine proteases, subtilase family, histidine active site. 231 241 IPR022398 -
Cma16g00017 806 Pfam Fibronectin type-III domain 674 769 IPR041469 -
Cma16g00017 806 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 32 119 IPR037045 -
Cma16g00017 806 Gene3D Peptidase S8/S53 domain 148 641 IPR036852 GO:0004252|GO:0006508
Cma16g00017 806 CDD Peptidases_S8_3 117 593 IPR034197 -
Cma16g00017 806 Pfam Subtilase family 145 592 IPR000209 GO:0006508|GO:0008236
Cma16g00017 806 ProSitePatterns Serine proteases, subtilase family, serine active site. 557 567 IPR023828 -
Cma16g00017 806 SUPERFAMILY Subtilisin-like 120 632 IPR036852 GO:0004252|GO:0006508
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00035 Cma-Chr15:203906 Cma16g00017 Cma-Chr16:100925 6.08E-13 dispersed
Cma16g00017 Cma-Chr16:100925 Cma07g00149 Cma-Chr7:768706 6.37E-180 dispersed
Cma16g00017 Cma-Chr16:100925 Cma16g00599 Cma-Chr16:3092759 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00017 - - qsu:112022505 997.653