Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00021 ATGGCGGTTGCTGAGAATGTTGGACCCAAAATCGGCTCTCCAAGTCAAAGTTTTGAAAACACGATGCTTTCCTCCGATTCTAATGATCCCAAGGATGTCGAAAATCAGAAGCCTAAGAACGATTCTGCGGTTTCGATTAATGCAGAACCCGACTTTCATCCCAACGGAATCGATCAGAATACACAGAAGAAGGCACACCTCCAGGAGAGAGCTGCTGCCGCAGCTTCTTTTGCACTTCCTTCACCCAATTTCAAGTCCCAAATGGGTCAGATGCAGAACGGGTTTGAAACTAATGCCCAGTCGCTAATGGTGAAGTCTGCTGGTGGTTATGGGATGAATCAGAGGCCTAATGGAGTGATAAACGGAGCCGATGGAGGGGAAAACTTTAAGAGGGATATGAGGGATCTGGAGGACTTACTATCCAAATTGAATCCCATGGCTGAGGAATTTGTTCCTCCTTCGCTAGCTAAAAATTTTTCTGGTTACTTCGGCGGTGCTGCCCTTGGGTATACGAACGACTTTCTATTGCAAGCTAATTCTCTCAACAACGAAGGGAATAATAATCGAAGGAAGAAGAATGGTTTTAGTCAAGGAAGACGGAAGACGAATAATAAGATGAATGCAGTGAAGCGAGATGAGATGACCCGGAGGACGGTGTATGTATCAGACATTGATCAGCAGGTGACTGAAGAGCTACTTGCTACTGTCTTTGCTAACTGTGGAGAGGTTGTTGACTGTCGTATCTGTGGTGATCCCAACTCCATTCTTCATTTTGCCTTCATTGAGTTCACTGATGAAGAGGGTGCAAGGGCTTCCTTGAATCTTTCAGGGACAGTGCTTGGTTTTTATCCAGTCAGAGTGCTGCCCTCAAAAACTGCAATAGCACCTGTCAATCCTGAATTTTTACCCAGGTCGGATGACGAACGTGAGATGTGCTCAAGAACTATCTATTGTACAAATATTGACAAGAAGGTTACTCAAGCAGAGGTCAAGCTGTTCTTTGAATCATTATGTGGAGAGGTTCAGCGCCTTAGGCTACTTGGAGATTATCATCATTCCACTCGTATAGCATTTGTTGAGTTTACAATGGCTGAGAGTGCAATTGCTGCTCTTAATTGCAGTGGAGTGGTGTTGGGTTCCCTGCCAATAAGGGTGAGCCCATCAAAGACCCCAGTTCGTCCTCGCTCTCCTCGTGCCCAGCTGAACTGA 1209 45.66 MAVAENVGPKIGSPSQSFENTMLSSDSNDPKDVENQKPKNDSAVSINAEPDFHPNGIDQNTQKKAHLQERAAAAASFALPSPNFKSQMGQMQNGFETNAQSLMVKSAGGYGMNQRPNGVINGADGGENFKRDMRDLEDLLSKLNPMAEEFVPPSLAKNFSGYFGGAALGYTNDFLLQANSLNNEGNNNRRKKNGFSQGRRKTNNKMNAVKRDEMTRRTVYVSDIDQQVTEELLATVFANCGEVVDCRICGDPNSILHFAFIEFTDEEGARASLNLSGTVLGFYPVRVLPSKTAIAPVNPEFLPRSDDEREMCSRTIYCTNIDKKVTQAEVKLFFESLCGEVQRLRLLGDYHHSTRIAFVEFTMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRSPRAQLN 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 112728 116108 + CmaCh16G000210.1 Cma16g00021 310619

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00021 402 MobiDBLite consensus disorder prediction 1 72 - -
Cma16g00021 402 Gene3D - 298 398 IPR012677 -
Cma16g00021 402 Gene3D - 177 294 IPR012677 -
Cma16g00021 402 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 402 - -
Cma16g00021 402 SUPERFAMILY RNA-binding domain, RBD 181 293 IPR035979 GO:0003676
Cma16g00021 402 CDD RRM1_CID8_like 216 294 IPR034823 -
Cma16g00021 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 390 IPR000504 GO:0003723
Cma16g00021 402 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 402 - -
Cma16g00021 402 SMART rrm1_1 315 386 IPR000504 GO:0003723
Cma16g00021 402 SMART rrm1_1 218 288 IPR000504 GO:0003723
Cma16g00021 402 Pfam Ataxin-2 C-terminal region 141 154 IPR009818 -
Cma16g00021 402 SUPERFAMILY RNA-binding domain, RBD 304 396 IPR035979 GO:0003676
Cma16g00021 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 217 292 IPR000504 GO:0003723
Cma16g00021 402 CDD RRM2_CID8_like 310 391 IPR034825 -
Cma16g00021 402 MobiDBLite consensus disorder prediction 181 205 - -
Cma16g00021 402 MobiDBLite consensus disorder prediction 10 29 - -
Cma16g00021 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 316 383 IPR000504 GO:0003723
Cma16g00021 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 219 281 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00021 - - - csv:101204595 718.768
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma16g00021 Cma18g01339 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00021 Cma-Chr16:112728 Cma16g00458 Cma-Chr16:2288525 1.76E-109 dispersed
Cma16g00021 Cma-Chr16:112728 Cma18g01339 Cma-Chr18:10199527 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g974 . . Bda05g00141 Bda07g01957 . . Bma10g01318 Bma14g02028 Cmo16g00026 Cmo18g01373 . . . . . . Cpe14g00018 . . . . . . . . . . . . . . . . . . . . . . Blo07g00318 Blo09g00003 . . . . . . . . . Cma16g00021 Cma18g01339 Car16g00021 . Cpe09g00011 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003779 2 1 2 2 1 1 1 1 1 2 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 4 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00021 Cma_Chr16 FPKM 66.614517 76.983742 68.224785 69.90757 53.217644 49.349701 57.912735 68.341782 70.680275 68.182999