Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00024 ATGGAGAGACAGGAGTATTTCATACTACCAAATTTTGAGACCGCAGCAGTAGCCTCTTCACAGATATGTTCAACTCCTAGGAGGAGGAGGAAGAAGAAAACCAACAACACGAACAAAAGAAGGTTTAGTGATGAACAAATCAGGTCACTGGAGTCCATATTTTACTCATCGGATTCAAAGCTCGATTCCAGGAAGAAGGTGCAGCTTGCAACTGAGTTGGGACTGCAACCTCGCCAAATTGCTATATGGTTTCAGAATAGAAGGGTAAGATGGAAGTCCAAGGAGATGGAGAACAATTTCAGGAGCCTCAGAGCTAATTATGACAATCTAGCATCTCAGTTTAAAACATTACAGGAAGAGAAGAACTCCTTGCTCTCACAGGTACCAAAGTTTTTCTTCCTTTTGCTAAAGTCCTTCTATTGCTGA 426 41.78 MERQEYFILPNFETAAVASSQICSTPRRRRKKKTNNTNKRRFSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRVRWKSKEMENNFRSLRANYDNLASQFKTLQEEKNSLLSQVPKFFFLLLKSFYC 141
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 121192 121617 + CmaCh16G000240.1 Cma16g00024 310622

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00024 141 ProSiteProfiles 'Homeobox' domain profile. 33 94 IPR001356 GO:0003677
Cma16g00024 141 CDD homeodomain 39 95 IPR001356 GO:0003677
Cma16g00024 141 Gene3D - 37 99 - -
Cma16g00024 141 Pfam Homeodomain 38 92 IPR001356 GO:0003677
Cma16g00024 141 Coils Coil 93 127 - -
Cma16g00024 141 ProSitePatterns 'Homeobox' domain signature. 69 92 IPR017970 GO:0000981|GO:0006355
Cma16g00024 141 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 17 131 IPR045224 GO:0003700
Cma16g00024 141 SUPERFAMILY Homeodomain-like 24 95 IPR009057 -
Cma16g00024 141 SMART HOX_1 29 98 IPR001356 GO:0003677
Cma16g00024 141 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 17 131 - -
Cma16g00024 141 Pfam Homeobox associated leucine zipper 94 128 IPR003106 GO:0006355|GO:0043565
Cma16g00024 141 PRINTS Lambda-repressor HTH signature 74 90 IPR000047 GO:0003677
Cma16g00024 141 PRINTS Lambda-repressor HTH signature 65 74 IPR000047 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00024 K09338 HD-ZIP; homeobox-leucine zipper protein - csin:114317616 139.428
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma16g00024 Cma18g01338 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00024 Cma-Chr16:121192 Cma07g00559 Cma-Chr7:2415764 1.91E-26 dispersed
Cma14g02132 Cma-Chr14:14631045 Cma16g00024 Cma-Chr16:121192 2.12E-34 wgd
Cma16g00024 Cma-Chr16:121192 Cma18g01338 Cma-Chr18:10196929 3.12E-34 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g986 . . Bda05g00138 Bda07g01954 . . Bma10g01316 Bma14g02025 Cmo16g00028 Cmo18g01371 . . . . . . . . . . . . . . . . . . . . . Cone1ag1012 Cone5ag0719 . . . . . . . . . . . . . . . . . Cma16g00024 Cma18g01338 Car16g00022 Car18g01252 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001722 2 3 1 3 2 2 3 2 2 1 2 2 3 2 2 3 2 3 0 2 2 2 2 2 2 2 2 5 2 3 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36496 PF00046 Homeodomain 4.70E-17 CL0123 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00024 Cma_Chr16 FPKM 5.701878 6.148526 12.072011 14.668627 1.456346 1.707587 2.08165 3.543513 2.912178 2.504344