Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00028 ATGGGGAACTCGAGCACAGAACTGCAAGAAATTGAGGCTGCTGAAACTATAGACCAAGTGAAGACTCGAGACGAGGCGGAGGATTTGAAAAGAGTTGCACCTTGGACTACGCAGATTACATTCCGGGGTGTTATTGCAAGCATAGCTATAGGAATTATGTACAGTGTAATAGTGATGAAGCTTAATCTTACAACAGGTTTGGTCCCAAATTTGAACGTCTCGGCCGCTCTTATTGCCTTTGTGTTTATAAAGACATGGACTACGCTGCTTGGGAAAGCTGGAATTGTATCCACTCCCTTTACGCGTCAGGAAAATACTGTAATTCAAACATGTGCTGTGGCTTGTTACAGCATTGCTGTTGGAGGTGGCTTTGGATCCTACTTGTTTGCTTTGAGCAGGAAGACATATGAACAAGCGGGCATGGACACGGAAGGAAATGCCTCTGGAAGCACCAAGGAACCTGGGATTGGTTGGATCATTGGCTTCCTCTCTGTCAGTAGTTTTGTTGGGCTTCTTGCGTTGGTTCCCCTCAGAAAGATCATGGTAATAGACTATAAATTGACCTATCCAAGTGGAACTGCAACTGCCGTTCTCATCAATGGTTTCCACACACCAAAAGGAGACAAGACGGCCAAGAAGCAGGTTGGTGGGTTCATGAAATATTTTTCATTCAGTTTTCTCTGGGCACTATTCCAATGGTTTTATTCTGGGGGAGGGAATTGTGGATTCTCGCAGTTTCCTACGTTTGGATTGAAAGCTTGGAAAGATTCGTTTTACTTTGATTTCAGCTTGACATATATTGGAGCAGGGATGATATGCTCCCATCTTGTAAACTTGTCGTTGCTTCTGGGTGCAGTTCTTTCTTGGGGCATAATGTGGCCCTTAATGAAGGGACTTAAAGGGGAGTGGTATCCTGGATCTCTTCCAGACAGTAGTATGAAAAGCCTCAATGGTTACAAGGTATTTGTATCAATTGCTTTGATACTTGGAGATGGGCTTTATCATTTCCTTAAGATTCTGTATTTCACCAGCTCCAGCATTTATGCAAAGGCAACCAACAAGAAGCTCAAAACATTCCCGGATGATTCAGTCCAATCTCTTGATGATCATCGACGAAATGAAGTGTTCTTAAGAGATGGTATTCCGTTGTGGGTGGCGATCACAGGGTACATCCTCTTCTCCATTGTCTCTGTCATCGTAATCCCAATCATGTTCCCGGAGGTCAAGTGGTATTACATAGTTGTTTCCTATACTTTGGCACCGTCTCTTAGCTTTTGCAATGCATACGGTGCGGGTCTAACTGATATGAATATGGCCTATAACTATGGGAAAGTGGCTCTGTTCGTGCTTGCTGCCATGGCGGGTAAAAATGAGGGTGTAGTTGCAGGACTTGTCGGTTGTGGTTTGATCAAGTCTATTGTTTCGATCTCCTCTGATTTGATGCACGATTTCAAGACTGGTCATCTTACACTTACATCTCCAAGATCCATGCTTTTGAGCCAAGCTATTGGCACAGGCATAGGCTGCATTGTATCTCCTCTCACATTCCTTATGTTCGACAAGGCTTTCGATCTCGCCAACCCAGATGGTGAATACAAGGTCCCATATGCCATAATATACCGAAACATGGCTATCCTAGGAGTTGAAGGCTTCTCAGCTCTGCCCCAGCATTGCTTGCAGCTGTGTTATGGGTTCTTTGGCCTTGCCATAGTAGCCAACTTGTTGAGAGATCTTACCCCTGAAAAATTTGGGAAATGGATCCCACTGCCTATGGCCATGGCCGTGCCTTTCCTCGTCGGTGCTTATTTCGCAATCGATATGTGCGTTGGGAGCTTGATCGTGTTTGTGTGGCACTATCTAAATCATGAAAAGGCTGGATTGATGGTTCCGGCTGTTGCCTCTGGGTTGATATGTGGAGAAGGCTTATGGATTCTCCCTTCATCAGTTCTTGCCTTGGCTAAGGTCCACCCCCCAATCTGCATGAGCTTTTTCTCTTCCAGTAAAAGTTGA 2010 44.88 MGNSSTELQEIEAAETIDQVKTRDEAEDLKRVAPWTTQITFRGVIASIAIGIMYSVIVMKLNLTTGLVPNLNVSAALIAFVFIKTWTTLLGKAGIVSTPFTRQENTVIQTCAVACYSIAVGGGFGSYLFALSRKTYEQAGMDTEGNASGSTKEPGIGWIIGFLSVSSFVGLLALVPLRKIMVIDYKLTYPSGTATAVLINGFHTPKGDKTAKKQVGGFMKYFSFSFLWALFQWFYSGGGNCGFSQFPTFGLKAWKDSFYFDFSLTYIGAGMICSHLVNLSLLLGAVLSWGIMWPLMKGLKGEWYPGSLPDSSMKSLNGYKVFVSIALILGDGLYHFLKILYFTSSSIYAKATNKKLKTFPDDSVQSLDDHRRNEVFLRDGIPLWVAITGYILFSIVSVIVIPIMFPEVKWYYIVVSYTLAPSLSFCNAYGAGLTDMNMAYNYGKVALFVLAAMAGKNEGVVAGLVGCGLIKSIVSISSDLMHDFKTGHLTLTSPRSMLLSQAIGTGIGCIVSPLTFLMFDKAFDLANPDGEYKVPYAIIYRNMAILGVEGFSALPQHCLQLCYGFFGLAIVANLLRDLTPEKFGKWIPLPMAMAVPFLVGAYFAIDMCVGSLIVFVWHYLNHEKAGLMVPAVASGLICGEGLWILPSSVLALAKVHPPICMSFFSSSKS 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 134110 136820 - CmaCh16G000280.1 Cma16g00028 310626

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00028 669 Pfam OPT oligopeptide transporter protein 38 650 IPR004813 GO:0035673
Cma16g00028 669 PANTHER METAL-NICOTIANAMINE TRANSPORTER YSL3 7 665 - -
Cma16g00028 669 PANTHER OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED 7 665 IPR045035 GO:0035673
Cma16g00028 669 TIGRFAM OPT_sfam: oligopeptide transporter, OPT superfamily 34 646 IPR004813 GO:0035673
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00028 - - - csv:101219824 1225.31
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma16g00028 Cma18g01334 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00941 Cma-Chr2:5580942 Cma16g00028 Cma-Chr16:134110 0 dispersed
Cma13g00959 Cma-Chr13:7510416 Cma16g00028 Cma-Chr16:134110 0 dispersed
Cma16g00028 Cma-Chr16:134110 Cma18g00101 Cma-Chr18:476546 0 dispersed
Cma16g00028 Cma-Chr16:134110 Cma18g01334 Cma-Chr18:10176428 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g993 . . Bda05g00135 Bda07g01951 Bpe03g00226 . Bma10g01313 Bma14g02022 Cmo16g00033 Cmo18g01365 . . . . . . Cpe14g00022 Bhi01g01522 Tan01g0058 . . . . . . . . . . . . Cone1ag1007 Cone5ag0715 . . . . . Cme06g01171 Blo07g00323 Blo09g00008 . . . . . . . . . Cma16g00028 Cma18g01334 Car16g00025 Car18g01250 Cpe09g00013 . . . . . . . . Cla05g00989 Cam05g1080 Cec05g1088 Cco05g1082 Clacu05g1074 Cmu05g1024 Cre05g1098 . Csa03g01963 Chy06g01175 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000598 4 9 3 3 2 3 3 3 3 4 3 3 3 4 4 3 3 3 3 3 4 2 2 2 2 4 2 4 10 3 104
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00028 Cma_Chr16 FPKM 0.360878 0.280246 0.719211 0.890815 0.516224 0.187918 0.600628 1.104778 1.176742 1.459923