Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00031 ATGGCTGCTTTTGCCCCGCTGCCGTTAACTTCGCCTTCTTTACATCCTGTTGTCCAATTCTCACCTCTTGTGTTCTCCTCAAAAGTTCTATATGACCCAAGTTCCCATTGCCTCACCGTCGGATCAATAAGACATGCAAGGCAAAAATTCACCTCCCAGACTAACCCGAGGAGCCTGATAATCCTTGGTGCAGCAACAAAAAGAGCAAAAACACCAGCTGAAGAGGATTGGAAGGTGAAGAGGGAACTTCTGCTGCAGAAAAGGGTTAGGAGTGTGGATGCGAATGAAGCTCTGCGCCTTCAGAAGGAAAATAACTTCGTGATTCTTGATGTGAGGCCAGAAGCAGAATTCAAAGAGGGCCATCCACCAGGGGCCATTAATGTGCAAATTTACAGGCTGATAAAGGAGTGGACAGCATGGGACATAGCCAGGCGAGCTGCATTTGCATTTTTTGGCATCTTTTCGGGTACAGAAGAAAACCCAGAATTCTTGCAAAGTGTAGAATCTAAAATAGCTAAAGATGCCAAAATAATAGTAGCATGCTCATCAGGTGGAACAATGAAACCTACCCAGAATCTTCCAGAAGGTCAACAATCAAGGTCATTGATAGCAGCCTACTTGTTGGTTCTCAATGGCTACACCAATGTATTTCATTTAGAAGGTGGTCTCTATAATTGGTTCAAAGAAGGATTGCCTGTAGATTCAGAAGAGTAA 714 44.12 MAAFAPLPLTSPSLHPVVQFSPLVFSSKVLYDPSSHCLTVGSIRHARQKFTSQTNPRSLIILGAATKRAKTPAEEDWKVKRELLLQKRVRSVDANEALRLQKENNFVILDVRPEAEFKEGHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESKIAKDAKIIVACSSGGTMKPTQNLPEGQQSRSLIAAYLLVLNGYTNVFHLEGGLYNWFKEGLPVDSEE 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 142607 144644 - CmaCh16G000310.1 Cma16g00031 310629

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00031 237 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 87 233 IPR036873 -
Cma16g00031 237 Gene3D - 76 234 IPR036873 -
Cma16g00031 237 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 14, CHLOROPLASTIC-RELATED 30 237 IPR043186 -
Cma16g00031 237 SMART rhod_4 92 232 IPR001763 -
Cma16g00031 237 Pfam Rhodanese-like domain 94 227 IPR001763 -
Cma16g00031 237 CDD RHOD 96 226 - -
Cma16g00031 237 ProSiteProfiles Rhodanese domain profile. 102 235 IPR001763 -
Cma16g00031 237 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 14, CHLOROPLASTIC 30 237 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00031 - - - csv:101219342 434.876
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00066 Cma-Chr14:291593 Cma16g00031 Cma-Chr16:142607 2.57E-11 dispersed
Cma16g00031 Cma-Chr16:142607 Cma07g00399 Cma-Chr7:1715090 1.91E-11 dispersed
Cma16g00031 Cma-Chr16:142607 Cma03g00645 Cma-Chr3:5492847 2.40E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g997 . Blo15g00078 . . . Bpe07g01026 . . Cmo16g00036 . . . . . Sed07g0876 . Cpe14g00024 Bhi01g01519 Tan01g0061 Cmetu06g0246 . Hepe07g0039 Mch10g0037 . . . . . . . . . . . Cone15ag0001 . . . Cme06g01169 . . Bda06g00795 . . . . Bma12g01221 . . . Cma16g00031 . Car16g00029 . . . . . . . . . . Cla05g00987 Cam05g1078 Cec05g1086 Cco05g1080 Clacu05g1072 Cmu05g1022 Cre05g1096 . Csa03g01965 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma04g00511 . 59 371 Sulfurtransferasese/Rhodanese AT1G79230 71.6 1.9e-137 486.1
Cma16g00370 . 59 341 Sulfurtransferasese/Rhodanese AT1G79230 61.3 1.8e-111 399.8
Cma04g00511 . 59 316 Sulfurtransferasese/Rhodanese AT1G16460 69.4 8.9e-104 374.0
Cma16g00370 . 59 288 Sulfurtransferasese/Rhodanese AT1G16460 57.7 8.4e-78 287.7
Cma13g01050 . 35 311 Sulfurtransferasese/Rhodanese AT5G23060 61.6 2.6e-86 316.2
Cma18g00031 . 39 315 Sulfurtransferasese/Rhodanese AT5G23060 57.3 1.5e-73 273.9
Cma14g02099 . 1 374 Sulfurtransferasese/Rhodanese AT4G01050 59.3 1.7e-111 400.6
Cma11g01228 . 36 639 Sulfurtransferasese/Rhodanese AT1G09280 63.7 1.2e-222 770.0
Cma04g01058 . 90 449 Sulfurtransferasese/Rhodanese AT2G40760 74.1 1.0e-155 547.4
Cma11g01009 . 82 428 Sulfurtransferasese/Rhodanese AT1G17850 66.0 3.5e-145 512.3
Cma03g00100 . 61 259 Sulfurtransferasese/Rhodanese AT2G42220 75.4 2.4e-84 309.3
Cma14g00066 . 4 215 Sulfurtransferasese/Rhodanese AT3G08920 58.0 9.2e-67 250.8
Cma10g00088 . 1 295 Sulfurtransferasese/Rhodanese AT4G24750 66.4 9.7e-112 400.6
Cma02g01280 . 67 292 Sulfurtransferasese/Rhodanese AT5G19370 64.3 9.7e-83 304.3
Cma16g00905 . 118 468 Sulfurtransferasese/Rhodanese AT5G55130 71.8 4.0e-147 518.5
Cma16g00031 . 57 237 Sulfurtransferasese/Rhodanese AT4G27700 79.6 1.1e-78 290.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011827 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00031 Cma_Chr16 FPKM 1.739575 1.842497 30.503128 31.802229 120.023232 112.182976 125.482689 7.962919 8.925551 9.082674