Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00033 ATGTCGGACGCTTATTGGAGGTATAGCGACTCGCAGCAGCAACCTCCGTCGTCGGTTCCTTCCGTCGCCGGGAAGCGCCCTCGCGTCGATTACGATACCAGTGGTCCTCACGATTTGCCCAACTATTACCCTCGTCAAGATGATAGACCAATCCTCCAAGGAATTAAAAGCGTTGATTCCATCAATGAGTCCTATGAACGTTACCTGCGCAGCTCGAAAATTTCATCTTATGGTGAACAGTCTGCTAGACCCGTTGGTGGGGGAGTTCCTGGTCATTCAATCAATGATCCTCCTCCTATAGTCGGGATTGGGGGTGTGGTTTCAGGGGCCAATGTTAATGATAGAAGTGCGAGCTTTGGAGGTGGAAGGCCTAACGTACCCCTTCCTCCAGATGCTTCTAATACACTATTTGTTGAAGGCTTGCCTTCCAGCTGTACACGGCGTGAAATAGCTCATATATTTCGCCCTTTTGTGGGCTACAAAGAAGTGAGACTTGTTAACAAGGAATCCAGAAATCCTGGAAGAGATTCAGTGGTGCTTGGTTTTGTAGATTTTGTGAGTCCTGCCCATGCAGCCACGGCAATGGATGCCTTACAAGGGTTCTTAGATTCCAAGTTGTGTGGCGTGAAGAATTTGAGTTTGTCGATGCTATCCTGCATTCGACCGGTGGGAAATCTTGTTAGTTATGTGATTGGTATCATAGATTATGCAGTCCAGCATCTCATGTTGACTTTCTGTTCTTCAGCAGATCTGTTGCATATATCAGTCGAGCTCGATTTTGCAGGTTATAAATTTGATGAGTTTGACCGTGACTCGGTCAATTTAAGGTTGCAATTTGCTCGCTTTCCTGGTGCAAGGATTTGCGCGTACTGTGAAGTTATGAATTTGAGGCAATGTGACAGTCAGGATATCAAAAACCGGAGCGAGCTTTGGCAATTGCTGCCAAGACTTAAGCCTGGCTTGATATTGATTTGTTGCTTGTGGCCTTTTCTACTGACAATGGGAGTGCAAGTAATAGGAACCAACTTCATATCAGAGCTTGTTGTTGCTGCTACTGCATTTATGACGAAGAAGGATGAGATGTCGATCTTCAAAATGGATCGAATCCCATTCCTTGAAGAACAGGTAAGGAAGGTGAAGGAACAGGGGAAGCTTATAACAATGGACATCGAAAGACTTCTGCTATCAGAGGACAACCGCTTCGATTTTGTGAACGAGGTTGCAGCAGAGGCTAAGGAATACGTGGAGAACAATCGTGACGAATATGGGGGTTCCAAGAAAGCCATTCTTCATGTTCTTAGCAACCGAGTGAACGATGCAGGGTTCTATCGGCCGGATGCATATGCAGAAGAGGACCCATTTAAACCCGGACCTCATTATCTCAAACAAGAATTTACTTGA 1401 45.75 MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPNYYPRQDDRPILQGIKSVDSINESYERYLRSSKISSYGEQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFGGGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDSVVLGFVDFVSPAHAATAMDALQGFLDSKLCGVKNLSLSMLSCIRPVGNLVSYVIGIIDYAVQHLMLTFCSSADLLHISVELDFAGYKFDEFDRDSVNLRLQFARFPGARICAYCEVMNLRQCDSQDIKNRSELWQLLPRLKPGLILICCLWPFLLTMGVQVIGTNFISELVVAATAFMTKKDEMSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 147900 154315 - CmaCh16G000330.1 Cma16g00033 310631

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00033 466 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 136 201 IPR000504 GO:0003723
Cma16g00033 466 MobiDBLite consensus disorder prediction 1 20 - -
Cma16g00033 466 MobiDBLite consensus disorder prediction 1 48 - -
Cma16g00033 466 SMART rrm1_1 135 210 IPR000504 GO:0003723
Cma16g00033 466 CDD RRM_RBPMS_like 134 201 - -
Cma16g00033 466 Gene3D - 130 216 IPR012677 -
Cma16g00033 466 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 134 200 IPR000504 GO:0003723
Cma16g00033 466 PANTHER PROTEIN MATERNALLY EXPRESSED GENE 5 13 288 - -
Cma16g00033 466 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 13 288 - -
Cma16g00033 466 SUPERFAMILY RNA-binding domain, RBD 128 201 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00033 - - - cmax:111482785 392.119
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02435 Cma-Chr4:16772826 Cma16g00033 Cma-Chr16:147900 9.12E-42 dispersed
Cma15g00612 Cma-Chr15:2892877 Cma16g00033 Cma-Chr16:147900 3.24E-41 dispersed
Cma16g00033 Cma-Chr16:147900 Cma01g00712 Cma-Chr1:3731404 4.58E-06 dispersed
Cma16g00033 Cma-Chr16:147900 Cma16g00038 Cma-Chr16:169751 2.13E-46 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1004 . . . Bda07g01945 Bpe03g00200 . . . Cmo16g00039 . . . . . . . Cpe14g00026 Bhi01g01516 Tan01g0067 . . Hepe07g0042 Mch10g0042 . . . . . . . . Cone1ag1002 Cone5ag0710 . . . . . Cme06g01167 . Blo09g00014 . . . . . . . . . Cma16g00033 . Car16g00032 . . . . . . . . . . Cla05g00986 Cam05g1077 Cec05g1085 Cco05g1079 Clacu05g1071 . . . Csa03g01967 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010365 1 3 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 2 1 0 1 1 1 1 1 1 1 0 4 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00033 Cma_Chr16 FPKM 15.893291 17.000536 24.347876 22.846203 50.099152 56.678444 52.471573 30.582273 32.193481 30.584045