Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00035 ATGGATCCCCCGAACGGCCGGCCTTCCTTCGAAATCCACATTGTCTCTTCCGTCGACTCTCCTGACTTCAGTCAGCTAACCCGAACGCTGACTCGCTCTAAGCTTATTGCGCTCGACGCCGAGTGGAAGCCCCTTCGATCTCCTAATCATTCTTCATTTCCCAGAGTCTCGCTTCTCCAGATCGCTTGCCAATTCCACTTGGACCAGCCGAATGATTCCGTGGTTTTTTTGCTCGACCTGCTGTCGCTTCCTTTATCCTCAGTTGGGGATTTGTTAAGGGATGTGTTTGTTTCACCCCATGTTTTGAAATTGGGTTTTCGATTTAAGCAAGATTTAGTTAACTTGTCGACTACTTTCTGCTCCTATGGCGGCGTCTCTGGGCTTGATCGTATTGAACCCTTTATGGATATTACGAGCATATACAATCATCTTCACCATAAGCAATATGGAAGAAAGATGCATAAGCAAGCGAAGAGTCTTGCCGCTATCTGCAGTGAAGTTCTGGAATTTTCTCTTTCGAAGGAACTTCAATGTAGTGATTGGTCCTATCGTCCCCTTACAGAAGAGCAGATAGCATACGCAGCCATGGATGCCCACTGCCTGCTCGAAATCTTTAATATCTTCAACTCCAAGGTTCTACAAGAAGGAGATGTTTTAAGGAATGTTTCAGTTCCTTCCATTGAAATGAATCTTGGGTTGAAAGTGATTCTGGAAAAGCAAGATTCGCATGAGAAGATATTAAGGACCAAGATTTCTGAAGCCTCATACATTATCAGAGCTACTGCATCTGATTTTCCACAGAGTACGGCTACTGTAAGGGCACATTGTTCTGCGTCATCGAGTATAAATTGTATGCCTATGGATGAAGGTCTTCTGAAAATTGTCAAGAGATATGGTGAAAAAATTATTTTGAAAGAGTCAGACAAAATGCCCAGGACCTCCAAAAGAAAAGGCAAGAGATCATCAACTATGAAAGTGGTTTGCAGTGAAAAGAAAATACTGGGAGTTGAAGATTGGCAGGGCCAACCACCGTGGGATTTGTCCTTAGGGGGTGATGGATGCCCTAAATTTCTATGTGATGTTATGGTTGAAGGTCTGGCAAAACATCTGCGTTGTATTGGGATTGATGCTGCAGTTCCGTTTTCCAAAAAGCCGGACTCTAGGGAATTAATTGATCAAGCATGCAAGGAGAAGAGAGTACTCTTGACCAGGGATGCTAAACTGCTGAGACATGAGTATTTGCTATGCAATCAAATATACAGAGTTAAAAGTCTTCTAAAGAACGAGCAGTTACTCGAGGTTATTGAAACTTTCAATTTGAAAATTAGTGAGGATCAGCTGATGTCTAGATGTACCAAATGCAATGGAAGGTTTATTCAAAAGCCGCTTACAACGGAGGAGGCTGTGCTGGCAGCAAAGGGGTTCCAAAGAATTCCGGACTGTTTGTTCGACAAGAATTTAGAGTTCTGGCAGTGCATGGACTGTCACCAACTATACTGGGAGGGGACACAATATCACAATGCAGTCCAGAAGTTCATTGATGTTTGCAAGTTGAATGAGTAG 1563 43.25 MDPPNGRPSFEIHIVSSVDSPDFSQLTRTLTRSKLIALDAEWKPLRSPNHSSFPRVSLLQIACQFHLDQPNDSVVFLLDLLSLPLSSVGDLLRDVFVSPHVLKLGFRFKQDLVNLSTTFCSYGGVSGLDRIEPFMDITSIYNHLHHKQYGRKMHKQAKSLAAICSEVLEFSLSKELQCSDWSYRPLTEEQIAYAAMDAHCLLEIFNIFNSKVLQEGDVLRNVSVPSIEMNLGLKVILEKQDSHEKILRTKISEASYIIRATASDFPQSTATVRAHCSASSSINCMPMDEGLLKIVKRYGEKIILKESDKMPRTSKRKGKRSSTMKVVCSEKKILGVEDWQGQPPWDLSLGGDGCPKFLCDVMVEGLAKHLRCIGIDAAVPFSKKPDSRELIDQACKEKRVLLTRDAKLLRHEYLLCNQIYRVKSLLKNEQLLEVIETFNLKISEDQLMSRCTKCNGRFIQKPLTTEEAVLAAKGFQRIPDCLFDKNLEFWQCMDCHQLYWEGTQYHNAVQKFIDVCKLNE 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 158177 162376 - CmaCh16G000350.1 Cma16g00035 310633

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00035 520 Pfam Mut7-C RNAse domain 355 511 IPR002782 -
Cma16g00035 520 SMART 35exoneu6 14 213 IPR002562 GO:0003676|GO:0006139|GO:0008408
Cma16g00035 520 Pfam 3'-5' exonuclease 20 212 IPR002562 GO:0003676|GO:0006139|GO:0008408
Cma16g00035 520 PANTHER 3'-5' EXONUCLEASE DOMAIN-CONTAINING PROTEIN 7 517 - -
Cma16g00035 520 SUPERFAMILY Ribonuclease H-like 7 216 IPR012337 -
Cma16g00035 520 Gene3D - 8 215 IPR036397 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00035 K09122 K09122; uncharacterized protein - csv:101218316 853.588
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00035 Cma-Chr16:158177 Cma11g01824 Cma-Chr11:12163643 1.12E-07 dispersed
Cma16g00035 Cma-Chr16:158177 Cma03g00226 Cma-Chr3:3380715 7.29E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1010 . . . Bda07g01943 Bpe03g00198 . . Bma14g02016 Cmo16g00041 . . . . . . . Cpe14g00028 Bhi01g01513 . . . . . . . . . . . . . Cone1ag1000 . . . . . . Cme06g01165 . Blo09g00016 . . . . . . . . . Cma16g00035 . Car16g00035 . . . . . . . . . . Cla05g00984 Cam05g1075 Cec05g1082 Cco05g1075 Clacu05g1069 Cmu05g1020 Cre05g1094 . Csa03g01969 Chy06g01179 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009012 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00035 Cma_Chr16 FPKM 6.305831 6.915121 6.140408 5.756464 8.521039 6.601623 8.336673 8.43669 8.556783 7.511795