Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00037 ATGGCTTTGCTGAGTCCTCGATTGCATAGATTCCGCCTAACCAAGCTCCACTATGCCTCCGCCTCCATACCCACAAAGACAAACCAGCTCACTCTCAGAAGAAAAAGCCGTTGCTGCTCCTCCATAGCTATCGATGCTCCATCTTCTTTAACAGATGCTGCGGGGATCAGATGGGGCTCGACGACTCTGCAAGGATTGCGCGAAGAAATGGAGGACGACGTTGTTGTGCGGTCTGATGGTCTTAGTGGCTTCTTGTTTGCTGCAGTGTTCGATGGCCATGGTGGCTATTCCTCCGTCAAGTTCCTCAGGGAGGAGCTGTACAAAGACTGCGTAGCAGCTTTACAAGGTGGCCTGCTGTTGAATGGAGGGGATTTTGAAGTGATAAAAGCAGCTTTGGCGAAGGCTTTTGATGAGACTGATAAAAAGTTACTCCTTTTGCTTGAAGCAGATGGGGAGGAAGATGAGTCTGGTTCCACGGCAACTGTTGCGTTCATACGAAACGATGTGTTGTTCGTTTCTCATGTTGGCGACTCTTGTGTTGTATTATCTCGTCCTGGAGGAGCTCAGGTGTTGACTAGTTCTCATCGGCCTTATGGAAACAACACCACCTCACTGCAAGAAGTTAAAAGAATTAGAGAAGCAGGTGGATGGATTGTTAACGGGAGAATCTGTGGGGATATCTCTGTATCGCGTGCATTTGGCGACATACGGTTCAAGACGAAGAAAAACGAGATGCTACAAAAAGGAGTTGAAGAAGGGAGATGGTCTGAAAAGTTTGTTTCTCGTGTACGTTTCAATGGAGACTTGGTTACTGCATCACCGGAAATTTTCCAAACTACACTCGGATCAAATGTTGAATTTATGCTGATAGCAACAGATGGCCTATGGGATTACATGAATAGATCCGATGCGGTTAAGTTTGTTCGAAATGAACTTAGACAGCATGGTGATGTTCAGCTAGCTTGTGAAGCCCTCGCGCAAGCAGCCTTGGATAAAGGGTCACAAGACAATATTAGCATTATCATGGCTGATTTCGGGCGGACGGATTGGCAGAATTTTCAGATGAAGCAAGAGAACGTCATATTTGAAGTGGCTCAAGCTTTTGCTACGATCGGGGTTGTTTCTCTCGGTATTTGGTGGGCGTCCTCGACTTTCTCTCTTTAA 1164 46.56 MALLSPRLHRFRLTKLHYASASIPTKTNQLTLRRKSRCCSSIAIDAPSSLTDAAGIRWGSTTLQGLREEMEDDVVVRSDGLSGFLFAAVFDGHGGYSSVKFLREELYKDCVAALQGGLLLNGGDFEVIKAALAKAFDETDKKLLLLLEADGEEDESGSTATVAFIRNDVLFVSHVGDSCVVLSRPGGAQVLTSSHRPYGNNTTSLQEVKRIREAGGWIVNGRICGDISVSRAFGDIRFKTKKNEMLQKGVEEGRWSEKFVSRVRFNGDLVTASPEIFQTTLGSNVEFMLIATDGLWDYMNRSDAVKFVRNELRQHGDVQLACEALAQAALDKGSQDNISIIMADFGRTDWQNFQMKQENVIFEVAQAFATIGVVSLGIWWASSTFSL 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 166272 169389 - CmaCh16G000370.1 Cma16g00037 310635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00037 387 Pfam Protein phosphatase 2C 59 338 IPR001932 -
Cma16g00037 387 Gene3D - 56 353 IPR036457 -
Cma16g00037 387 SUPERFAMILY PP2C-like 54 346 IPR036457 -
Cma16g00037 387 SMART PP2C_4 47 343 IPR001932 -
Cma16g00037 387 CDD PP2Cc 56 345 IPR001932 -
Cma16g00037 387 PANTHER PROTEIN PHOSPHATASE 2C 6 382 IPR015655 GO:0004722|GO:0006470
Cma16g00037 387 ProSiteProfiles PPM-type phosphatase domain profile. 57 345 IPR001932 -
Cma16g00037 387 PANTHER PROTEIN PHOSPHATASE 2C 57 6 382 - -
Cma16g00037 387 ProSitePatterns PPM-type phosphatase domain signature. 86 94 IPR000222 GO:0043169
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00037 Cma-Chr16:166272 Cma12g01161 Cma-Chr12:9161099 2.06E-33 dispersed
Cma16g00037 Cma-Chr16:166272 Cma18g01322 Cma-Chr18:10121096 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00037 K04457 - csv:101218076 665.225