Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00038 ATGGAAAAGTCTAGATCTAAGAGAAACTACTACTATGACCACCAAGACTATGATTCGGAGGCGATGGGTAGAACCAGACCTCGTTACAACAATCACTACGCCAATAATAACTATCGTCACCGTGGGAGTGCTGTTCGACCGACTAAACCTCAAGACCAATCTCTTATGGTGACCACGACTTACAGGATACTCTGTCATGATGCCAAGGCCGGGGGAGTTATTGGCAAATCTGGCAGTATCATTAAGTCCATAAGGCAGCACACCGGCGCGTGGATCAACGTGCATGAGCTTGTTCCCGGCGATGAGGAGAGAATAATTGAGATATCGGACACTCGGCGGCGGGACCCGGAAGGCCGGATGCCGTCATTCTCTCCGGCGCAAGAAGCGCTTTTCTTGATTCATGAAAGGATTCTCGAGAGTGAAATGAGTCCTGGGTTCAATGGAATGGGCTATGGTCCTGAGGATGAGGAGGATGACTACGGCGGCGTTAGAGGAGGAGCTGGTGGCGGTAGTAGCCGTGTGTCAACAAGGCTTGTCGTGTCTAGAATGCACGTAGGTTGTTTGCTTGGCAAGGGAGGAAAGATAATCGAACAAATGAGGATGGAAACCAAGACCCAGATAAGGATTCTTCCCAGAGATCACAATTTGCCTCGTTGCATTTCAATGTCGGAGGAGATTGTCCAGATTGTTGGAGATGCAAATGCTGTAAAGAAAGCTGTAGCTATTGTTTCATCACGCTTGAGAGAGAGTCAGCACCGCAACCGTAGTCATTTCCATGGGCGTCTACATTCACCAGAACGTATTTTACCTCCCGATGATGATTATGTTCCACCTATTGCACGACGGTTATCGATGGATGGACGACCATTCAGACCACACATATCTAATACAAGAGGCAATGACTATTCCAACCGCCAATCTAATTTTTTGGTGGAGCCTGGAGCTGCTTCTGTTAACGACAATATGATGCCCTTTTATGGTGAGGACCTTGTATTTAGAATATTATGCCCAATCGATAAGGTTGATAGTGTTATTGGAGACTCTGACGGAATCATAGAATTACTTCGGGATGAAGTTGGTGTGGATATCAAGGTTTCTGACCCTGTGACTGGTTCGAACGAACAGATTCTGATAATTTCTTCAGATGAGGGTCCAGATGATGAGCTTTTTCCAGCACAGGAAGCTTTGTTACACATCCAAACTCGCATTGTTGATCTTGTTCCTGATAAAGATGACATCGTAACTACTAGGTTACTTGTACCATCAAGTGATATTGGATGTTTGGAGGGAAGAGATGGATCATTGTTAGAGATGAAGAGATTAACCGGTGCAAATGTACATATTGTGCCCCGAGAAGAACTTCCCATGTTTGTATCAGGGGCTGACGAGCTCGTACAGATCATAGGAGACATAAAAGCAGCTCGAGATGCAGTTGTTGAGTTAACATCTAGATTACGAAATTATCTTTATAAGGAACCGTTCCAAAAAGATGCAAGTCCTCCAGTCTCATTACCAAGCTCCATGGGCAGTTTAGGACTCGAGGAATCATCTTCAAATAATAATGCTTCAGCTCGTGAAGTTCATAGTGGAAATGATTCTTCAATCACAGCCTATCAAAATGTGCAACCTTTTGGAACGGCACAGCTTCTAAAGGAAAATGGAGGGTCGAGCAATGAAACTGGTACGCAGAATGAAAATGACCGACGTGAAGATTTGCCTAGTGGGTTAAATAGAATCCCTGTGCCGCTTGTCACTCGGAGTACACTTGAAGTTGTGATACCAGAGGCTGCAGTTCCCAAGCTTATAACAAAATCAAAAAACAAGCTTGCTCAGATCAGTGAGGTGTTATCGGGAGCCAATGTTACACTGGTAGAAGATAGACCAGATGAAACCCAGAAGATAATCCAAATATCAGGCACACCAGAGCAGGCTGAGAGAGCCCAGAGCTTGCTGCAAGGCTTTATTTTGAGCATATCATCCCAGAATGAAGAAGATAGGACAACGATGACTACAATTCCATCACTCTCCTTTGCTTCACCTAGGATAGAGGTGAGGGTTGGAATTTCTCATGGATTTAACTCTCCTCCCCGGCTACAGGTGGCCGCCAGAAAGCAAGGAAATGGTGAAGGTGTCGGGCGGCGAGTGTGGCGACGAAGAACATTGACGAAGAAGGATGAGATGTCGATCTTCAAAATGGATCGAATTCCATTCCTTGAAGAACAGGATGGTAAAGGAATAGGGGAAGCTCATAACAATGGACATCGAAAGACTTCTGCTATCAGAGGACAACGCTTCGATTTTGTGAATGAGGTTGCAGCGGAGGCTACGGAATACGTGGAGAACAATTGTGACGAATATGGGGGTTCTAAGAAAGCCATTCTTCATGTTCTTAGCAACCGAGTGAACGATGCAGGGTTCTATCGGCCGGATGCATATGCAGAAGAGGACCCATTTAAGCCCGGACCTCATTACCTCAAACAAGAATTTACTTGA 2493 45.41 MEKSRSKRNYYYDHQDYDSEAMGRTRPRYNNHYANNNYRHRGSAVRPTKPQDQSLMVTTTYRILCHDAKAGGVIGKSGSIIKSIRQHTGAWINVHELVPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHERILESEMSPGFNGMGYGPEDEEDDYGGVRGGAGGGSSRVSTRLVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHNLPRCISMSEEIVQIVGDANAVKKAVAIVSSRLRESQHRNRSHFHGRLHSPERILPPDDDYVPPIARRLSMDGRPFRPHISNTRGNDYSNRQSNFLVEPGAASVNDNMMPFYGEDLVFRILCPIDKVDSVIGDSDGIIELLRDEVGVDIKVSDPVTGSNEQILIISSDEGPDDELFPAQEALLHIQTRIVDLVPDKDDIVTTRLLVPSSDIGCLEGRDGSLLEMKRLTGANVHIVPREELPMFVSGADELVQIIGDIKAARDAVVELTSRLRNYLYKEPFQKDASPPVSLPSSMGSLGLEESSSNNNASAREVHSGNDSSITAYQNVQPFGTAQLLKENGGSSNETGTQNENDRREDLPSGLNRIPVPLVTRSTLEVVIPEAAVPKLITKSKNKLAQISEVLSGANVTLVEDRPDETQKIIQISGTPEQAERAQSLLQGFILSISSQNEEDRTTMTTIPSLSFASPRIEVRVGISHGFNSPPRLQVAARKQGNGEGVGRRVWRRRTLTKKDEMSIFKMDRIPFLEEQDGKGIGEAHNNGHRKTSAIRGQRFDFVNEVAAEATEYVENNCDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT 830
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 169751 176748 - CmaCh16G000380.1 Cma16g00038 310636

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00038 830 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 328 434 IPR036612 GO:0003723
Cma16g00038 830 ProSiteProfiles Type-1 KH domain profile. 173 243 - -
Cma16g00038 830 Gene3D K Homology domain, type 1 57 140 IPR036612 GO:0003723
Cma16g00038 830 Gene3D K Homology domain, type 1 170 252 IPR036612 GO:0003723
Cma16g00038 830 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN RCF3 3 566 - -
Cma16g00038 830 ProSiteProfiles Type-1 KH domain profile. 329 396 - -
Cma16g00038 830 MobiDBLite consensus disorder prediction 496 531 - -
Cma16g00038 830 CDD PCBP_like_KH 60 134 - -
Cma16g00038 830 CDD PCBP_like_KH 177 244 - -
Cma16g00038 830 MobiDBLite consensus disorder prediction 549 578 - -
Cma16g00038 830 ProSiteProfiles Type-1 KH domain profile. 586 651 - -
Cma16g00038 830 Pfam KH domain 60 109 IPR004088 GO:0003723
Cma16g00038 830 Pfam KH domain 176 243 IPR004088 GO:0003723
Cma16g00038 830 Pfam KH domain 415 480 IPR004088 GO:0003723
Cma16g00038 830 Pfam KH domain 588 652 IPR004088 GO:0003723
Cma16g00038 830 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 52 111 IPR036612 GO:0003723
Cma16g00038 830 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 169 254 IPR036612 GO:0003723
Cma16g00038 830 Gene3D - 328 490 - -
Cma16g00038 830 Gene3D K Homology domain, type 1 585 657 IPR036612 GO:0003723
Cma16g00038 830 MobiDBLite consensus disorder prediction 500 531 - -
Cma16g00038 830 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 3 566 - -
Cma16g00038 830 CDD KH-I 588 652 - -
Cma16g00038 830 SMART kh_6 172 248 IPR004087 GO:0003676
Cma16g00038 830 SMART kh_6 585 656 IPR004087 GO:0003676
Cma16g00038 830 SMART kh_6 57 138 IPR004087 GO:0003676
Cma16g00038 830 SMART kh_6 328 401 IPR004087 GO:0003676
Cma16g00038 830 SMART kh_6 412 486 IPR004087 GO:0003676
Cma16g00038 830 MobiDBLite consensus disorder prediction 252 273 - -
Cma16g00038 830 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 578 657 IPR036612 GO:0003723
Cma16g00038 830 ProSiteProfiles Type-1 KH domain profile. 58 130 - -
Cma16g00038 830 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 406 493 IPR036612 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00038 K21444 PCBP3_4; poly(rC)-binding protein 3/4 - csv:101217605 1134.78
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma16g00038 Cma18g01323 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00038 Cma-Chr16:169751 Cma19g00482 Cma-Chr19:5763124 1.27E-08 dispersed
Cma16g00033 Cma-Chr16:147900 Cma16g00038 Cma-Chr16:169751 2.13E-46 proximal
Cma16g00038 Cma-Chr16:169751 Cma18g01323 Cma-Chr18:10125793 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1025 . . . . Bpe03g00230 . . . Cmo16g00045 . . . . . Sed07g0871 . Cpe14g00031 Bhi01g01505 Tan01g0081 Cmetu06g1355 . Hepe07g0050 Mch10g0048 . . . . . . . . Cone1ag0995 Cone5ag0699 . . . . . Cme06g01156 Blo07g00331 . . . . . . . . . . Cma16g00038 Cma18g01323 Car16g00038 Car18g01235 . . . . . . . . . Cla05g00979 Cam05g1071 . . . . Cre05g1090 . Csa03g01974 Chy06g01186 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007315 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00038 Cma_Chr16 FPKM 9.2501 8.431804 11.911359 10.594457 17.343035 16.599041 16.707747 14.09243 13.449233 12.982831