Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00047 ATGGCCGCCGCCGCGGCTCTCAGGTCCAGGTCTTCCAAGGAAGTTTCCAGTTTCACGGTTTCTCGCTCTAGACACTCTATATCCAATTATCTTCACGCTGCTTCCAATCCCAATTCCCACTGCACGAACCGTAAAAAGTCGAACGACCTCTATCTCAACTCACCTTACCACTTGGTCTCTTTCAAGCCGGTCTCACTCAGAGGCGATTTTATTGAGAACAGAAGTCAACCATCCGATCATCGAAGGATTTACCGCAATTATAACAAGAACTTGTATGAGAAGTTGGGCAGGGGGGGTTGTTTTATGAGCACTTATGGGGACCCGCCGGAGGTTTGGTCTGGAGATGGGATTGTGATTCGTGGGAGCAATCCAAACTTGAATGGTAGTGGAGGCGGCGGTGGCAGCTCCAACTCTGGTTCTGGTGGTGAGTTCGGCTCAAACTCGAATGATGGGTGTTGGGGTGGTTCTAGTTTGGGACCTAATTTCCCAACCCCGAAGGAAATCTCCAAGGGGCTTGATAAATTTGTAATTGGTCAGGAGAGAGCTAAAAAGGTGCTCTCTGTGGGTGTTTACAATCACTACAAGCGCATCTATCATGAATCGCTACAAAGGCCTACAGGAGATACAGTTGACAACAAAGCTGATGCTGTGGATGATGATAAAGTGGAACTTGAGAAAAGTAACATCCTTCTGATGGGGCCAACAGGCTCAGATGCAACTACCCTAACACAGGCAGGATATGTTGGAGAAGATGTCGAGTCTATATTATACAAACTTCTGATGGCTGCTGATTATAATGTGGCAGCTGCGCAGCAGGGCATCGTTTACATTGATGAAGTTGATAAAATTACCAAGAAGGTTCTCCTCGGTTCTTCTATTCCTCTCTCCCTTCCCAGCTTCTATGGAAGGACTGATGCAGAGAGCCTTAATATTAGCAGAGATGTGTCAGGAGAGGGTGTGCAGCAGGCATTATTAAAAATGCTAGAAGGAACGGTCAACGTTTATGATAATGTGCAGAAGCCAAATGTGACTTATGATGCCATAGAAGCCATTGAGATGATTGTCAACGTGCCTGAGAAGGGTGCACGAAAGCATCCCAGAGGTGAAAATATCCAGATCAACACTAAGGATATTCTTTTCATATGTGGGGGTGCCTTCATCGACTTGGAAAAAACAATCTCAGACAGGCGCCAAGATTCTTCTTTAGGGTTTGGGGCTCCAGTTCGTGCAAACATGAGGACAGGTGGTGTTACAGACGCCATTGTTACTTCTTCTCTGTTGGAGACCGCTGAGAGCAGTGATCTTATTGCATATGGGTTAATACCTGAATTTGTTGGTCGATTCCCTATCCTTGTCAGTTTGTCAGCCTTAACAGAAAACCAACTTGTTCAGGTCAAGCTCCACTTCATAGAAAATGCCCTGAGATTAATAGCAAGGAAGGCAATGTCTAAGAACACTGGAGCACGGGGCTTGCGATCAATATTGGAGAATCTATTGATGGATGCTATGTATGAGATTCCTGATGTCAGAACAGGTGAGGATATAATTGATGCAGTCATCGTTGATGAAGAATCCATTGGGTCGAACAGCCCCGGTTCTGGTGCCAAAATACTTTATGGACAGGGGGCATTGGATCGCTATCTTTCAGGACAAAAGGCAACAAGAGTTAGAGAGCCAGAACCTGAAGGTGAAACAGATCTTCCTTCAGTGGTTGCCGGCAGCATTATTGAGTGTGTGTCATCTTCAGATGGTCTCGATGAGGATGAGATCCATCTGCATCACACTCTTCATCCTTATTCCCATTCTCATCATCATCCAGAGTTGTCATCGACGAAACCTCGTAATGGAAGCAACAATAGTGCTATAACAGGCCCCACTGCGACTGCGCCGGCCACTAGCGTCCATGAATTGCTCGAGTGCCCTGTCTGCACCAATTCTATGTACCCACCCATCCATCAGAATGGAGATTCTTTGGCTCTCCACCCTGGGGGGAGAGAGGGAGAGAAGGCTGATTTGATTTTCGATTTACGAGGGTGGGGAAGGGTTGATCGTTCAATGTCTGCTGGAAGTTTGGGGATTTATCTCAATCTTTCTTCCTGTATCATTGGCAGAATTCGAGTTGGCCATCAGGATGGTGATAGACAAGAGCTTGGAGATATTAGGTGCTTAGCACTGGAGAAGGTGGCGGAGTCACTCGAATTGCCTTGCAAGTATTATTCCTTGGGATGCCCTGAAATATTTCCATACTACAGTAAACTTAAGCATGAGGCTTTGTGCAACTTCAGACCTTACAATTGCCCATATGCCGGGTCGGAATGCTCTGCTGTTGGAGATATTCCTTTCCTTGTTGCTCATCTGAGGGATGACCACAAGGTGGACATGCACACTGGATGCACATTCAACCATCGCTATGTGAAATCCAATCCAAGGGAAGTGGAGAATGCCACTTGGATGCTTACTGTGTTCAATTGTTTTGGTCAATATTTCTGCCTTCACTTTGAAGCCTTTCAGCTTGGCATGGCTCCAGTCTATATGGCTTTCCTTCGTTTCATGGGTGATGAGAATGAGGCTCGAACCTACAGCTACAGTCTTGAGGTTGGTGGATATGGTCGAAAACTAATATGGGAAGGCACGCCACGAAGTATTAGAGATAGTCATCGAAAAGTGAGGGACAGCCATGATGGGCTAATCATTCAAAGAAACATGGCTCTATTCTTCTCTGGTGGGGATAGGAAGGAACTGAAGCTAAGAGTTACAGGAAGGATATGGAAGGAACAAAACCCAGATGCTGGGAGAAGTGGAATATCAACACAAATGCCTTGCCTTGACAACTTTGATTATGATTGCATTTCGTTCACTGCAGATTCTTTCTCACCTTCCTTGTTCCCAAACAACTTGGATGACAGTAAAGAAGAGACCGCAGCTTTTGCACTTCTTTTCTGTGCCTCTGCTGCCTCAGCCTCCTTTGCCTTCGCTTCAGCTTTCACTCTTTCTTTCTCTTCCATTAGTTTACCTAAATCTCCTTCCCTGTCTTCCTTCCTCAGCTCACCTCTGACAAACTCCTGCAACTCTTCAGAAAATTCAATCCCATCATCATCCAGAAGAGTATCAACCACATTTAGCATTTCATCCAGCTGCCCCGATTCACTTAACGCCTTCATTATAAACTGA 3171 45.79 MAAAAALRSRSSKEVSSFTVSRSRHSISNYLHAASNPNSHCTNRKKSNDLYLNSPYHLVSFKPVSLRGDFIENRSQPSDHRRIYRNYNKNLYEKLGRGGCFMSTYGDPPEVWSGDGIVIRGSNPNLNGSGGGGGSSNSGSGGEFGSNSNDGCWGGSSLGPNFPTPKEISKGLDKFVIGQERAKKVLSVGVYNHYKRIYHESLQRPTGDTVDNKADAVDDDKVELEKSNILLMGPTGSDATTLTQAGYVGEDVESILYKLLMAADYNVAAAQQGIVYIDEVDKITKKVLLGSSIPLSLPSFYGRTDAESLNISRDVSGEGVQQALLKMLEGTVNVYDNVQKPNVTYDAIEAIEMIVNVPEKGARKHPRGENIQINTKDILFICGGAFIDLEKTISDRRQDSSLGFGAPVRANMRTGGVTDAIVTSSLLETAESSDLIAYGLIPEFVGRFPILVSLSALTENQLVQVKLHFIENALRLIARKAMSKNTGARGLRSILENLLMDAMYEIPDVRTGEDIIDAVIVDEESIGSNSPGSGAKILYGQGALDRYLSGQKATRVREPEPEGETDLPSVVAGSIIECVSSSDGLDEDEIHLHHTLHPYSHSHHHPELSSTKPRNGSNNSAITGPTATAPATSVHELLECPVCTNSMYPPIHQNGDSLALHPGGREGEKADLIFDLRGWGRVDRSMSAGSLGIYLNLSSCIIGRIRVGHQDGDRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHEALCNFRPYNCPYAGSECSAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFNCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGRSGISTQMPCLDNFDYDCISFTADSFSPSLFPNNLDDSKEETAAFALLFCASAASASFAFASAFTLSFSSISLPKSPSLSSFLSSPLTNSCNSSENSIPSSSRRVSTTFSISSSCPDSLNAFIIN 1056
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 199743 210152 + CmaCh16G000470.1 Cma16g00047 310645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00047 1056 MobiDBLite consensus disorder prediction 611 627 - -
Cma16g00047 1056 Pfam C-terminal, D2-small domain, of ClpB protein 464 506 IPR019489 -
Cma16g00047 1056 Gene3D - 456 536 - -
Cma16g00047 1056 SUPERFAMILY TRAF domain-like 731 923 - -
Cma16g00047 1056 CDD Sina 792 920 - -
Cma16g00047 1056 MobiDBLite consensus disorder prediction 122 147 - -
Cma16g00047 1056 Pfam AAA domain (Cdc48 subfamily) 237 286 IPR003959 GO:0005524|GO:0016887
Cma16g00047 1056 Pfam AAA domain (Cdc48 subfamily) 310 450 IPR003959 GO:0005524|GO:0016887
Cma16g00047 1056 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 4 336 - -
Cma16g00047 1056 PANTHER CLP PROTEASE REGULATORY SUBUNIT CLPX1, MITOCHONDRIAL 4 336 - -
Cma16g00047 1056 Pfam Seven in absentia protein family 720 919 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cma16g00047 1056 MobiDBLite consensus disorder prediction 598 627 - -
Cma16g00047 1056 SMART ClpB_D2_small_2 457 526 IPR019489 -
Cma16g00047 1056 CDD AAA 226 287 - -
Cma16g00047 1056 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 522 IPR027417 -
Cma16g00047 1056 ProSiteProfiles Zinc finger SIAH-type profile. 731 791 IPR013010 GO:0008270
Cma16g00047 1056 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 788 919 IPR008974 GO:0005515
Cma16g00047 1056 Gene3D - 158 237 IPR027417 -
Cma16g00047 1056 Gene3D - 238 455 IPR027417 -
Cma16g00047 1056 PANTHER CLP PROTEASE REGULATORY SUBUNIT CLPX1, MITOCHONDRIAL 353 572 - -
Cma16g00047 1056 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 353 572 - -
Cma16g00047 1056 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 726 786 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00047 Cma-Chr16:199743 Cma17g00559 Cma-Chr17:4545506 2.67E-149 dispersed
Cma16g00047 Cma-Chr16:199743 Cma18g01332 Cma-Chr18:10151205 3.33E-178 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00047 K03544 - csv:101215939 813.527