Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00050 ATGGCCTACGGCAGGCTCAACCAAACCGACCCTGGCGGCACTTCCTCTGACGCACCTTCCCAACTCTCCCACCATGCCGTTTCTCCCAACCCACGGAGAAGGCGGCTCATCCTTATCTCCCTCCTCTCTCTCATTCTCATCGTCGCTGCCGCTGTCTCTGCCACGTTTCTCGTCGGCCTCCGAACCGCCTCCTCGGTCCGATCCGACCCCAATCTCCCTCGAAAACCGACTCAGGCCATTTCCAAGGCCTGCAGCCGAACTCGCTTCCCGACTCTCTGTGTCAACTCGCTCCTCGATTTCCCTGGATCTCTGAACGCCAATGAACAGGATCTGGTCCACATTTCCTTTAACATGACTCTCCAGCACCTCAACAAAGCCCTCTACTTCTCCTCTGGAATCTCCTCTCTGCAAATGGATCTTCGCGTACGCTCCGCCTACGATGCCTGTCTTGAACTCCTCGACGACTCTGTCGACGCCCTTACCCGCTCCTTGCAGTCCGTCGCGCCCTCTTCCTCCAACGGCGGCCCTCAACGCCTTGGCTCCTCCGATGACGTCATCACCTGGCTCAGCGCTGCCCTTACCAATCAAGACACATGCACGGACGGATTCTCCCAACTCTCCGGCTCTGTCAAAGACCAAATGGCCGATAAACTCCACAATTTGTCCGAACTCGTCAGCAATTGCTTGGCACTGTTTTCCGGCAGTGTAACGAGCGATTTCTCCGGAGTGCCGATTCAGAACAAGCGCCGGTTGATGAACGCCGGCGAAAACGAGGATACTTCCGGTAGCTTCCCCGGCTGGATGAGTCGGAGAGAGAGGAGGTTACTGACGTTGCCGGTGGGGGCGTTACAGGCCGATATTGTGGTTTCTCAGAACGGAAGCGGAACGGTGAAGACGATCGCGGAAGCGATCAAAAAGGCGCCGCAGTACAGTAACAGAAGGACGATCATATACGTGATGGCAGGAAGGTACGAAGAGAAAAATCTGAAGGTGGGGAGGAAGAAATGTAACCTGATGTTTGTTGGGGATGGCAAGGGTAAAACTGTCATTTCCGGTGGTAAGAGCATCTTTGACAACGTCACAACCTTTCACACGGCGTCGTTTGCGGCCACCGGCGCTGGTATAATCTTGAGGGACATGACATTTGAGAATTGGGCGGGGCCCGGCCGGCACCAGGCAGTTGCACTTCGAGTTGGCGGCGACCACGCAGTGGTGTACCGCTGCAACATAATTGGCTATCAAGACACTCTCTACGTCCATTCCAACCGCCAGTTCTACCGGGAGTGCGACATTTATGGGACGGTGGATTTCATCTTCGGCAATGCGGCGGTGGTGTTTCAGAACTGCAGCATCTACGCCCGAAAGGCAATGGACCTTCAAAAGAACACAATCACGGCCCAAAACCGGAAGGATCCCAATCAGAACACTGGAATTTCCATCCACGCGTGTCGGATTTTGGCCGCCTCCGATCTGGCGTCGTCCAATAGCAGCAACCCGACCTATTTGGGGCGTCCGTGGAAATTATATTCCAGAGTCGTGTTCATGCTATCGTACATAGGGAGCCACGTGCACCCACGCGGTTGGCTGGAGTGGAATGCCACGTTTGCGCTGGACACGCTGTATTATGGGGAGTATATGAATTACGGACCGGGTGGGGCGGTGGGCCAAAGGGTGACATGGCCTGGGTATCGGGTCATAACTTCCACGGTGGAGGCGAGTAAGTTCACGGTGGCGCAGTTCATTTACGGCTCGTCGTGGTTGCCGTCCACGGGAGTTGCATTCCTGGGAGGGCTAAATGTGTAA 1803 55.57 MAYGRLNQTDPGGTSSDAPSQLSHHAVSPNPRRRRLILISLLSLILIVAAAVSATFLVGLRTASSVRSDPNLPRKPTQAISKACSRTRFPTLCVNSLLDFPGSLNANEQDLVHISFNMTLQHLNKALYFSSGISSLQMDLRVRSAYDACLELLDDSVDALTRSLQSVAPSSSNGGPQRLGSSDDVITWLSAALTNQDTCTDGFSQLSGSVKDQMADKLHNLSELVSNCLALFSGSVTSDFSGVPIQNKRRLMNAGENEDTSGSFPGWMSRRERRLLTLPVGALQADIVVSQNGSGTVKTIAEAIKKAPQYSNRRTIIYVMAGRYEEKNLKVGRKKCNLMFVGDGKGKTVISGGKSIFDNVTTFHTASFAATGAGIILRDMTFENWAGPGRHQAVALRVGGDHAVVYRCNIIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVFQNCSIYARKAMDLQKNTITAQNRKDPNQNTGISIHACRILAASDLASSNSSNPTYLGRPWKLYSRVVFMLSYIGSHVHPRGWLEWNATFALDTLYYGEYMNYGPGGAVGQRVTWPGYRVITSTVEASKFTVAQFIYGSSWLPSTGVAFLGGLNV 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 219206 221834 - CmaCh16G000500.1 Cma16g00050 310648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00050 600 CDD PMEI-like_3 83 233 - -
Cma16g00050 600 Gene3D - 280 598 IPR012334 -
Cma16g00050 600 SMART PMEI_2 75 231 IPR006501 GO:0004857
Cma16g00050 600 Gene3D Invertase/pectin methylesterase inhibitor family protein 77 234 IPR035513 -
Cma16g00050 600 MobiDBLite consensus disorder prediction 8 27 - -
Cma16g00050 600 TIGRFAM PME_inhib: pectinesterase inhibitor domain 54 232 IPR006501 GO:0004857
Cma16g00050 600 PANTHER PECTINESTERASE 26 598 - -
Cma16g00050 600 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 78 233 IPR035513 -
Cma16g00050 600 Pfam Plant invertase/pectin methylesterase inhibitor 79 231 IPR006501 GO:0004857
Cma16g00050 600 MobiDBLite consensus disorder prediction 1 27 - -
Cma16g00050 600 Pfam Pectinesterase 286 583 IPR000070 GO:0030599|GO:0042545
Cma16g00050 600 PANTHER PECTINESTERASE 26 598 - -
Cma16g00050 600 ProSitePatterns Pectinesterase signature 2. 431 440 IPR033131 -
Cma16g00050 600 SUPERFAMILY Pectin lyase-like 282 596 IPR011050 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01117 Cma16g00050 CCT
Cma15g01025 Cma16g00050 CCT
Cma16g00050 Cma18g01316 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g01132 Cma-Chr10:7805763 Cma16g00050 Cma-Chr16:219206 1.95E-132 dispersed
Cma16g00050 Cma-Chr16:219206 Cma17g01067 Cma-Chr17:7630092 1.04E-167 dispersed
Cma17g01269 Cma-Chr17:8613554 Cma16g00050 Cma-Chr16:219206 7.12E-07 dispersed
Cma15g01025 Cma-Chr15:6364490 Cma16g00050 Cma-Chr16:219206 0 wgd
Cma16g00050 Cma-Chr16:219206 Cma18g01316 Cma-Chr18:10105679 0 wgd
Cma16g00050 Cma-Chr16:219206 Cma02g01117 Cma-Chr2:6634770 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00050 - - csv:101214987 1069.3