Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00062 ATGCATTCACTGGACAAGCTGCAGCTCACTAATACCACCCGCAACTTCCTCCGACCATCGGACGCCGGAATGTGCGACCACACAACCATGATTAAAACCAAGAATGCACGCCGGAGACGGCTCAGAGTTCGTAAACTGAGGTACAAATGGCAGAGGAAGGTACACGCGGCAGAGGAAGGCGAGGGCGACGAATTACTCGAAAGTGGAGTTTCGAAATCGAATTGTGATCCAATACTACACTATGAGAACGAATCCATTTCGGCGTCTGATAGTGGAGTGTACAGTGAGATGTCGATCATAGGGCGGAGGAAGGAGATGGAAGATGAAGTGAGAGTGGAATTGGGATTGACGGCGATTAATAATGAGAAGTACGATTTCTTCGCCGTGTACGACGGACACGGTGGCGCGCAGGTGGCGCAGGTGTGCCGCGAGCGTTTGCACCGGATTGTGGCGGAGGAGATTGTGGCTCGGGGAGAGATGGATGAGGCGGAGTGGACGAGGTTGATGGAGAGGTGCTTTGAGAGAATGGACGGCGAAGTGAGTAGCGGTGCTGCTGTGATGAAGACGGTCGGCTCGGCGGTGGTTTCCGCGGTGATCGGAAAGGAGGAGGTGGTGGTGGCCAACTGCGGCGATTGTCGAGCCGTTTTGGGTAGGGATGGAATTGCCTTGCCCTTGTCTAACGATCATAAGCCTGGCAGAGCTGATGAGTTGAAGAGAATTGAATCTGCTGGTGGGAGGGTCATAAACTGGAATGGCTACCGCGTGCTAGGAGTTCTTGCCACTTCAAGATCCATCGGTGATGAATATCTTAAACCATTTGTAATCTCCAAACCAGAAGTGACTGTGACCAAGCGAACCGAAAAGGATGAGTTCCTCATATTAGGAAGTGATGGTCTGTGGGACGTGATTTCGAACGAAATTGCCTGCAACGTAGTAAGGAGATGTTTTGGAGGCAAAATGAAGAGGATTGCATTAAAGATGGCGAATGGCAGCCATGTCGCTGAAGCTGCAACAGTGTTGGTGGAGCTTGCGGTGGCTCGTGGAAGCAAAGACAACATCAGTGTAATAGTAGTAGATTTGAGGAAAACAAACAGTTCTTCCTCTCCATAA 1110 50.9 MHSLDKLQLTNTTRNFLRPSDAGMCDHTTMIKTKNARRRRLRVRKLRYKWQRKVHAAEEGEGDELLESGVSKSNCDPILHYENESISASDSGVYSEMSIIGRRKEMEDEVRVELGLTAINNEKYDFFAVYDGHGGAQVAQVCRERLHRIVAEEIVARGEMDEAEWTRLMERCFERMDGEVSSGAAVMKTVGSAVVSAVIGKEEVVVANCGDCRAVLGRDGIALPLSNDHKPGRADELKRIESAGGRVINWNGYRVLGVLATSRSIGDEYLKPFVISKPEVTVTKRTEKDEFLILGSDGLWDVISNEIACNVVRRCFGGKMKRIALKMANGSHVAEAATVLVELAVARGSKDNISVIVVDLRKTNSSSSP 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 273810 276290 + CmaCh16G000620.1 Cma16g00062 310660

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00062 369 CDD PP2Cc 93 360 IPR001932 -
Cma16g00062 369 Pfam Protein phosphatase 2C 95 353 IPR001932 -
Cma16g00062 369 SMART PP2C_4 84 358 IPR001932 -
Cma16g00062 369 Gene3D - 89 367 IPR036457 -
Cma16g00062 369 ProSiteProfiles PPM-type phosphatase domain profile. 93 360 IPR001932 -
Cma16g00062 369 PANTHER ALPHABET, ISOFORM E-RELATED 73 362 - -
Cma16g00062 369 PANTHER PHOSPHATASE 2C FAMILY PROTEIN 73 362 - -
Cma16g00062 369 ProSitePatterns PPM-type phosphatase domain signature. 126 134 IPR000222 GO:0043169
Cma16g00062 369 SUPERFAMILY PP2C-like 89 361 IPR036457 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00062 K14497 PP2C; protein phosphatase 2C [EC:3.1.3.16] - csv:101214188 558.525
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00106 Cma-Chr15:484972 Cma16g00062 Cma-Chr16:273810 1.10E-81 dispersed
Cma16g00062 Cma-Chr16:273810 Cma18g01202 Cma-Chr18:9526783 4.57E-74 dispersed
Cma16g00062 Cma-Chr16:273810 Cma05g00420 Cma-Chr5:1893659 3.01E-73 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g883 . . . . Bpe03g00182 . . . Cmo16g00068 . . . . . Sed07g0841 . Cpe14g00050 Bhi01g01472 Tan01g0125 Cmetu06g1353 . Hepe07g0077 Mch10g0077 . . . . . . . . Cone1ag0966 Cone5ag0672 . . . . . Cme06g01115 . Blo09g00035 . . . . . . . . . Cma16g00062 . Car16g00056 . . Cpe13g00356 . . . . . . . Cla05g00958 Cam05g1049 Cec05g1054 Cco05g1048 Clacu05g1042 Cmu05g0992 Cre05g1069 . Csa03g02203 Chy06g01234 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006690 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 3 1 1 1 1 1 1 1 1 1 2 3 3 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00062 Cma_Chr16 FPKM 1.236002 0.900349 94.166771 88.850121 1.252027 1.412047 1.159398 3.669741 4.003477 3.770298