Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma16g00066 | ATGATGGTCGATACGGGTGCATCGGAAAATCGTGCGACGGTTGTTGATAAGCATCCGGAAGATGAAGATGGTGGTTATGCCAGTGGAGGGTGGAAAAGTGAAGATGGCAAACTTAGTTGGGGGTATTCGAGTCTCCGAGGAAAGAGGGCGACCATGGAAGATTTCTTTGATATTAAAATGTCAAAGGTTGATGGTCAAATGGTCTGCCTTTTTGGCATCTTTGATGGTCATGGTGGATACCGTGCTGCAGAGTTTTTGAAGGACCATCTCTTCGAGAATCTGATAAAGCACCCAAAATTTTTGATAGATACCAAATTAGCTATCAGAGAAACGTATCGACAGACGGATGCTGAATTTTTAAATTCCGAAAAGGATACTTTAAGGGACGATGGCTCTACTGCTTCAACAGCTTTGTTAGTTGGCAATCATCTCTATGTTGCCAATGTTGGAGATTCGCGTACTATTATATCGAAGGGCGGTGAAGCCATCCCTCTTTCTGAGGACCATAAACCAAACAGAACTGACGAGCGGAGGCGAATTGAAAATGCCGGGGGTGTTGTCATGTGGGCTGGCACTTGGAGGGTAGGAGGAGTGTTAGCGATGTCCCGTGCTTTCGGTAACAAGATGTTGAAGCAGTTCGTTGTGGCAGATCCTGATATTCAGGATCTTGAAGTGGACAAGGACATCGAGCTGCTTGTTCTCGCAAGCGATGGACTTTGGGACGTGGTACGCAACGAGGATGCAGTATTAGTTGCGAGGAAAGAAGAGGGACCAGAGGCAGCTGCTCGGAAACTAACTGAAGCAGCGTTTACCCGTGGTAGCGCTGACAATATAACATGCATTGTGGTGAAGTTTCATCACGACAATGCAGGCACGGATGTCGAAGACGACTAA | 894 | 46.64 | MMVDTGASENRATVVDKHPEDEDGGYASGGWKSEDGKLSWGYSSLRGKRATMEDFFDIKMSKVDGQMVCLFGIFDGHGGYRAAEFLKDHLFENLIKHPKFLIDTKLAIRETYRQTDAEFLNSEKDTLRDDGSTASTALLVGNHLYVANVGDSRTIISKGGEAIPLSEDHKPNRTDERRRIENAGGVVMWAGTWRVGGVLAMSRAFGNKMLKQFVVADPDIQDLEVDKDIELLVLASDGLWDVVRNEDAVLVARKEEGPEAAARKLTEAAFTRGSADNITCIVVKFHHDNAGTDVEDD | 297 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 282142 | 284899 | + | CmaCh16G000660.1 | Cma16g00066 | 310664 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma16g00066 | 297 | CDD | PP2Cc | 41 | 285 | IPR001932 | - | |
Cma16g00066 | 297 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Cma16g00066 | 297 | PANTHER | ALPHABET, ISOFORM E-RELATED | 18 | 295 | - | - | |
Cma16g00066 | 297 | Pfam | Protein phosphatase 2C | 43 | 278 | IPR001932 | - | |
Cma16g00066 | 297 | SMART | PP2C_4 | 29 | 283 | IPR001932 | - | |
Cma16g00066 | 297 | SUPERFAMILY | PP2C-like | 36 | 286 | IPR036457 | - | |
Cma16g00066 | 297 | ProSitePatterns | PPM-type phosphatase domain signature. | 70 | 78 | IPR000222 | GO:0043169 | |
Cma16g00066 | 297 | ProSiteProfiles | PPM-type phosphatase domain profile. | 39 | 285 | IPR001932 | - | |
Cma16g00066 | 297 | SMART | PP2C_SIG_2 | 21 | 285 | IPR001932 | - | |
Cma16g00066 | 297 | MobiDBLite | consensus disorder prediction | 11 | 28 | - | - | |
Cma16g00066 | 297 | PANTHER | PROTEIN PHOSPHATASE 2C 52-RELATED | 18 | 295 | - | - | |
Cma16g00066 | 297 | Gene3D | - | 31 | 291 | IPR036457 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g00294 | Cma-Chr11:1455272 | Cma16g00066 | Cma-Chr16:282142 | 1.88E-35 | dispersed | |
Cma15g00634 | Cma-Chr15:2995479 | Cma16g00066 | Cma-Chr16:282142 | 4.09E-100 | dispersed | |
Cma16g00066 | Cma-Chr16:282142 | Cma16g00257 | Cma-Chr16:1214713 | 4.90E-60 | dispersed | |
Cma16g00066 | Cma-Chr16:282142 | Cma18g01303 | Cma-Chr18:10027315 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma16g00066 | K17506 | - | csv:101203681 | 554.288 |