Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00066 ATGATGGTCGATACGGGTGCATCGGAAAATCGTGCGACGGTTGTTGATAAGCATCCGGAAGATGAAGATGGTGGTTATGCCAGTGGAGGGTGGAAAAGTGAAGATGGCAAACTTAGTTGGGGGTATTCGAGTCTCCGAGGAAAGAGGGCGACCATGGAAGATTTCTTTGATATTAAAATGTCAAAGGTTGATGGTCAAATGGTCTGCCTTTTTGGCATCTTTGATGGTCATGGTGGATACCGTGCTGCAGAGTTTTTGAAGGACCATCTCTTCGAGAATCTGATAAAGCACCCAAAATTTTTGATAGATACCAAATTAGCTATCAGAGAAACGTATCGACAGACGGATGCTGAATTTTTAAATTCCGAAAAGGATACTTTAAGGGACGATGGCTCTACTGCTTCAACAGCTTTGTTAGTTGGCAATCATCTCTATGTTGCCAATGTTGGAGATTCGCGTACTATTATATCGAAGGGCGGTGAAGCCATCCCTCTTTCTGAGGACCATAAACCAAACAGAACTGACGAGCGGAGGCGAATTGAAAATGCCGGGGGTGTTGTCATGTGGGCTGGCACTTGGAGGGTAGGAGGAGTGTTAGCGATGTCCCGTGCTTTCGGTAACAAGATGTTGAAGCAGTTCGTTGTGGCAGATCCTGATATTCAGGATCTTGAAGTGGACAAGGACATCGAGCTGCTTGTTCTCGCAAGCGATGGACTTTGGGACGTGGTACGCAACGAGGATGCAGTATTAGTTGCGAGGAAAGAAGAGGGACCAGAGGCAGCTGCTCGGAAACTAACTGAAGCAGCGTTTACCCGTGGTAGCGCTGACAATATAACATGCATTGTGGTGAAGTTTCATCACGACAATGCAGGCACGGATGTCGAAGACGACTAA 894 46.64 MMVDTGASENRATVVDKHPEDEDGGYASGGWKSEDGKLSWGYSSLRGKRATMEDFFDIKMSKVDGQMVCLFGIFDGHGGYRAAEFLKDHLFENLIKHPKFLIDTKLAIRETYRQTDAEFLNSEKDTLRDDGSTASTALLVGNHLYVANVGDSRTIISKGGEAIPLSEDHKPNRTDERRRIENAGGVVMWAGTWRVGGVLAMSRAFGNKMLKQFVVADPDIQDLEVDKDIELLVLASDGLWDVVRNEDAVLVARKEEGPEAAARKLTEAAFTRGSADNITCIVVKFHHDNAGTDVEDD 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 282142 284899 + CmaCh16G000660.1 Cma16g00066 310664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00066 297 CDD PP2Cc 41 285 IPR001932 -
Cma16g00066 297 MobiDBLite consensus disorder prediction 1 30 - -
Cma16g00066 297 PANTHER ALPHABET, ISOFORM E-RELATED 18 295 - -
Cma16g00066 297 Pfam Protein phosphatase 2C 43 278 IPR001932 -
Cma16g00066 297 SMART PP2C_4 29 283 IPR001932 -
Cma16g00066 297 SUPERFAMILY PP2C-like 36 286 IPR036457 -
Cma16g00066 297 ProSitePatterns PPM-type phosphatase domain signature. 70 78 IPR000222 GO:0043169
Cma16g00066 297 ProSiteProfiles PPM-type phosphatase domain profile. 39 285 IPR001932 -
Cma16g00066 297 SMART PP2C_SIG_2 21 285 IPR001932 -
Cma16g00066 297 MobiDBLite consensus disorder prediction 11 28 - -
Cma16g00066 297 PANTHER PROTEIN PHOSPHATASE 2C 52-RELATED 18 295 - -
Cma16g00066 297 Gene3D - 31 291 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00294 Cma-Chr11:1455272 Cma16g00066 Cma-Chr16:282142 1.88E-35 dispersed
Cma15g00634 Cma-Chr15:2995479 Cma16g00066 Cma-Chr16:282142 4.09E-100 dispersed
Cma16g00066 Cma-Chr16:282142 Cma16g00257 Cma-Chr16:1214713 4.90E-60 dispersed
Cma16g00066 Cma-Chr16:282142 Cma18g01303 Cma-Chr18:10027315 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00066 K17506 - csv:101203681 554.288