Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00067 ATGAACTTCTCTCTTCTTTTTAGCCATGTTTTGCTGAAAGGAAAATCCGTGCTCCTAATTTTCCTTCCCTTCACTTTCGGTCTTCCCGCCCTCCGCCGCACACTGCTCTGGAGATCGATAATGGGACTCTCCGGGCTGCTTTCCGGTCACCGGAACTCCGTACAAGGTTCCGATTTCCACAACTACACTTCATGGCTGAAACAATACCCCAGTGGTTTGGAATCGTTTGAGTCCATAATGAAAGAGCTACCGAGGAAGAAGATTGTGGTGTTCTTGGATTATGATGGAACCCTTTCTCCCATTGTGGATGATCCTGATCGAGCTTTCATGTCTCCTGAGATGAGAGAAGCTGTGAGAGAAGTGGCAAAAGGCTTTCCGACTGCCATAATAAGCGGAAGAAGCCGAGAAAAGGTAAAGGAGTTCGTGAAATTGAGGAATCTGCACTATGCTGGGAGCCATGGATTAGACATTATGTCTCCAAATTCGGACAATGAGGCTAATGGGGTTTCCTATCAACCAGCCAAGAAGTTTTTACCAAAAATTCAACAAATAAAACGCGTATTAGAGGAAGAAACTAGAAAGATCGAAGGTGCATTGGTGGAGGATAATACGTTTTGTGTTTCTGTACACTTTCGGCACGTGCACGAAAGGGAGTTGGCGGAATTAGAAAAGAAGGTAGAGACTGTTATGGAAAAATATCCTGATTTTCATGTAACGCAGGGCAAAAAGGTTATGGAAATAAGGCCGACCATTAATTGGAACAAAGGGCATGCAATGGAGTATTATCTGCACAGTCTGGGACATAACGACACCGACGATGTGGTTCCTTTGTACATTGGCGATGATCAAACGGACGAGGACGCTTTCAAGGTAATACAAAGGAAAGGACATGGAATTGCGATACTCGTGGCATCCATTCCAAAGCACACAAACGCTTCCTACTCGTTGAAGGACCCATCGGAGGTTCTTGCTTTTTTGCTAAGGCTGGCCAGATGGAGGAACTCCACAGCCCCTTCAATTACAACCCCATCTCCTAATATTTAA 1044 45.02 MNFSLLFSHVLLKGKSVLLIFLPFTFGLPALRRTLLWRSIMGLSGLLSGHRNSVQGSDFHNYTSWLKQYPSGLESFESIMKELPRKKIVVFLDYDGTLSPIVDDPDRAFMSPEMREAVREVAKGFPTAIISGRSREKVKEFVKLRNLHYAGSHGLDIMSPNSDNEANGVSYQPAKKFLPKIQQIKRVLEEETRKIEGALVEDNTFCVSVHFRHVHERELAELEKKVETVMEKYPDFHVTQGKKVMEIRPTINWNKGHAMEYYLHSLGHNDTDDVVPLYIGDDQTDEDAFKVIQRKGHGIAILVASIPKHTNASYSLKDPSEVLAFLLRLARWRNSTAPSITTPSPNI 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 287937 289940 + CmaCh16G000670.1 Cma16g00067 310665

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00067 347 Pfam Trehalose-phosphatase 91 320 IPR003337 GO:0003824|GO:0005992
Cma16g00067 347 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 58 341 - -
Cma16g00067 347 Coils Coil 212 232 - -
Cma16g00067 347 CDD HAD_TPP 89 324 - -
Cma16g00067 347 TIGRFAM T6PP: trehalose-phosphatase 86 330 IPR003337 GO:0003824|GO:0005992
Cma16g00067 347 Gene3D - 174 250 - -
Cma16g00067 347 SUPERFAMILY HAD-like 89 331 IPR036412 -
Cma16g00067 347 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 90 295 IPR006379 -
Cma16g00067 347 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 58 341 IPR044651 GO:0004805|GO:0005992
Cma16g00067 347 Coils Coil 181 201 - -
Cma16g00067 347 Gene3D - 90 316 IPR023214 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00067 K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12] - csv:101204169 436.032
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00067 Cma-Chr16:287937 Cma16g00689 Cma-Chr16:3588515 6.01E-105 dispersed
Cma16g00067 Cma-Chr16:287937 Cma16g00191 Cma-Chr16:843023 5.51E-107 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g876 . . . . Bpe03g00178 . . . Cmo16g00071 . . . . . . . Cpe14g00053 Bhi01g01461 . . . . Mch10g0084 . . . . . . . . . . . . . . . Cme06g01082 . . . . . . . . . . . Cma16g00067 . Car16g00059 . . . . . . . . . . Cla05g00952 Cam05g1042 Cec05g1047 Cco05g1041 Clacu05g1033 Cmu05g0983 Cre05g1062 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010851 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 0 1 1 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00067 Cma_Chr16 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0