Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00072 ATGGTTGATAATTTAGCTGATTTTTTCCAACAAAATGAAGAATTTGTCGACCATACCACAAACCCCCAGTTGGAAGGAGGATATGACCTCTTCAGCATCTTTGATACTTTGGAGAATGTTGCAGAATTCAGTATGATCGAGGACGACACCGAGCTTGAGACTTCCCCTAAAACCAAGCGCTTGAAAGTGACGGCAGCGACGTCTCCGACCACCGCTATGGCTGGTGTCTCTTCCTCAGAGGATGCAAACCCTGACGGAGCACAAAGAATGTCTCACATCACGGTAGAGCGCAACCGTAGGAAGCAAATGAACGAGCACTTGTCGGTGTTGAGATCGCTCATGCCTTGTTTCTATGTCAAGAAAGGAGATCAAGCTTCAATAATTGGAGGGGTGGTGGAATACATCAAAGAGTTGCAACAAGTTCTTCAATCACTAGAGGCCAAAAAGCAAAGGAAAGTGTATAGTGAAGTGTTGAGCCCTAGGGTTGTTGTTTCAAGTCCAAGGCCTTTCCCAATGAGTCCAAGAAAGCCACCACCACTAAGTCCTCGCCTTAACTTGCCAATTAGTCCAAGAACCCCACAACCCACTAGCCCTTACAGCAAGCCTCCAAGGTTGCAACAGCCTCCCACCACCGATATGGCTAATAACAACAACAGCACAGGCGAGCCATCGCCCTGTAATTCATCTTCCACCACAAATTCCTCCATTGACAATGGTAACAATGGTAACAATGATCTTGTGGCGAATTCAAAATCCGGCATAGCTGAGGTTGAGGTGAAGTTTACAGGTCCAAATGTGGTTTTGAAGACAGTTTCTGCACCGATCCCTGGACAAGCTGTGAAGATCATTGCTGCCCTTGAACAACTCTCACTTGAAATTCTCCATGTCAAGATCACCACCGTTGATGATACCATGTTTAACTCTTTTACAATTAAGATCGGAATTGAATGCCAACTTAGTGCAGAGGAACTGGCTCACCAAATTCAGCAAACATTCTGCTAA 1002 45.51 MVDNLADFFQQNEEFVDHTTNPQLEGGYDLFSIFDTLENVAEFSMIEDDTELETSPKTKRLKVTAATSPTTAMAGVSSSEDANPDGAQRMSHITVERNRRKQMNEHLSVLRSLMPCFYVKKGDQASIIGGVVEYIKELQQVLQSLEAKKQRKVYSEVLSPRVVVSSPRPFPMSPRKPPPLSPRLNLPISPRTPQPTSPYSKPPRLQQPPTTDMANNNNSTGEPSPCNSSSTTNSSIDNGNNGNNDLVANSKSGIAEVEVKFTGPNVVLKTVSAPIPGQAVKIIAALEQLSLEILHVKITTVDDTMFNSFTIKIGIECQLSAEELAHQIQQTFC 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 305173 307123 - CmaCh16G000720.1 Cma16g00072 310670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00072 333 SMART finulus 93 144 IPR011598 GO:0046983
Cma16g00072 333 Gene3D - 79 152 IPR036638 GO:0046983
Cma16g00072 333 MobiDBLite consensus disorder prediction 206 247 - -
Cma16g00072 333 CDD bHLH_AtFAMA_like 90 163 - -
Cma16g00072 333 MobiDBLite consensus disorder prediction 164 247 - -
Cma16g00072 333 MobiDBLite consensus disorder prediction 170 205 - -
Cma16g00072 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 86 157 IPR036638 GO:0046983
Cma16g00072 333 Coils Coil 131 151 - -
Cma16g00072 333 PANTHER TRANSCRIPTION FACTOR SPEECHLESS 47 333 - -
Cma16g00072 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 87 138 IPR011598 GO:0046983
Cma16g00072 333 MobiDBLite consensus disorder prediction 65 85 - -
Cma16g00072 333 MobiDBLite consensus disorder prediction 65 86 - -
Cma16g00072 333 Pfam Helix-loop-helix DNA-binding domain 88 139 IPR011598 GO:0046983
Cma16g00072 333 PANTHER TRANSCRIPTION FACTOR FAMA 47 333 IPR044283 GO:0003700|GO:0010052
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma16g00072 Cma18g01299 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00072 Cma-Chr16:305173 Cma12g00225 Cma-Chr12:1104808 2.12E-33 dispersed
Cma16g00072 Cma-Chr16:305173 Cma18g01299 Cma-Chr18:10009273 2.63E-174 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36501 PF00010 HLH 4.10E-12 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00072 K20558 - csv:101211617 454.521