Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00073 ATGTCTGGAACCACTGCTTGGAGTAATGGGTGGCTAAGTTTCTGCAGAGCTCAATTGCCTCCAGGTCATACTCCTCCAACTGTGTTTAGTCGAGGAGGATTGTCGCAAGTCCAGGAGTTCCAACAGTTCTCGCTCAATCAGCTATTCTTCAAGCTTGCAAGTCGCATCTACAATTGTTTTTACTCAAGAAAGAATGCCCATTTCACAATGAATGTCTTCAAATATCATCACCACTTCCGCCTGCAGATTCTCGGAAGGCTTCTCCTAAATTATTTCGTTGGTGAAGGGCCTTCTATCAGTAGCCGAATTGGGTCCAAACAATGCTTCGGCAATCACTCAGAAGATCAGCAGATGACGGAATTCATGGAATACTTAGATTCTCTGAAGAACTACGAGAAGTTGGGTGTGCCCACAGGCGCAGGGACGGATTCTGAGGATGGGTTCGATCTCGGAAGGATGAAAAGACTGATGGAGCGCCTGGGTAATCCACAATCGAAGTTTAAGGCAATTCACATTGCGGGAACCAAGGGAAAAGGGTCGACTGCGGCCTTCCTGTCTAACATTTTACGAGCAGAGGGATACTCTGTTGGTTGTTATACTAGTCCTCATATTGAAACTATAAGGGAACGTATTTCGCTCGGAAGATCTGGAGAGATGGTCTCTGGAAAGGCACTAAATTTTCTTTTCAAAAGGAACAAAGAGTTACTTGACCAATCGGTAAAACTTGAAAATGGACGTATAAGCCACTTCGAGGTCCTTACTGCTATGGCATTTTCACTCTTTGCTCAAGAGAATGTTGATGTTGCAGTCATTGAGGCTGGACTTGGTGGTGCACGAGATGCAACAAACATTATTTGTAGCTCTATACTTGCTGCTGCAGTCATAACTTCAATTGGAGAGGAACACATGGCTGCTCTGGGTGGCTCTTTGGAAAGCATTGCAATGGCAAAGGCTGGAATAATTAAACATGGATGTCCGACCATTCTGGGTGGTCCTTTCATTCCAAATATTGAGTGCATTCTTCGCGACAAAGCATTGTCCATGTCTTCGCCTGTAGTATCAGCCTCAGATCCTGGAAATAGAAGTACCATAAAAGGTGTAAGCCTGCTCAATGGAAGACTTTGCCAATGCTGCGACCTAATAATCCAAACAGACGATGAATTCATTGAGTTATTTGATGTCAACCTCCGCATGCTTGGACGTCATCAACTTCAGAATGCAGCAACTGCAACTTGTGTTATTCTTACTCTCCGCAATTTAGGTTGGAGAATTTCAGATGCATCTATTAGGAGTGGACTAGAGAAAACATTCTTGGTCGGTAGGAGTCATTTCTTATCAGCCAAGGAAGCTGGGATGCTTGGACTACCTGGAACAACAATATTGCTTGATGGAGCCCACACCAAAGACTCTGCTAAAGCATTAGTGGACACCATTCAAATGAGTTTTCCCGATGCTCAATTGGCTCTCGTGGTTGCAATGGCTAGTGATAAGGATCACAATGGTTTTGCCACAGAATTTCTTCAATGTGGAAAATTGGAGTCCATTGTCTTAAGTGAAGCCAATATTGGTGGAGGCAAATCAAGGACAACTTCAGCTGCTCTTCTAAGGGACTGCTGGATCCAAGCATCCAATGAAATGGGGATCCCTACACAGACCTCGTTATTGACTACAGAGACCTCGTTATTACGTGCCATAAAAATCGCTGCTGAGATTCTCAAGCAGAGAACCGAAGGGCGGCGAGGCCTTGTCGTAGTAACTGGCTCCCTGCATGCTGTTTCAATGGTGTTATCTTCTCTTCATTCTTGA 1806 44.57 MSGTTAWSNGWLSFCRAQLPPGHTPPTVFSRGGLSQVQEFQQFSLNQLFFKLASRIYNCFYSRKNAHFTMNVFKYHHHFRLQILGRLLLNYFVGEGPSISSRIGSKQCFGNHSEDQQMTEFMEYLDSLKNYEKLGVPTGAGTDSEDGFDLGRMKRLMERLGNPQSKFKAIHIAGTKGKGSTAAFLSNILRAEGYSVGCYTSPHIETIRERISLGRSGEMVSGKALNFLFKRNKELLDQSVKLENGRISHFEVLTAMAFSLFAQENVDVAVIEAGLGGARDATNIICSSILAAAVITSIGEEHMAALGGSLESIAMAKAGIIKHGCPTILGGPFIPNIECILRDKALSMSSPVVSASDPGNRSTIKGVSLLNGRLCQCCDLIIQTDDEFIELFDVNLRMLGRHQLQNAATATCVILTLRNLGWRISDASIRSGLEKTFLVGRSHFLSAKEAGMLGLPGTTILLDGAHTKDSAKALVDTIQMSFPDAQLALVVAMASDKDHNGFATEFLQCGKLESIVLSEANIGGGKSRTTSAALLRDCWIQASNEMGIPTQTSLLTTETSLLRAIKIAAEILKQRTEGRRGLVVVTGSLHAVSMVLSSLHS 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 312869 319929 - CmaCh16G000730.1 Cma16g00073 310671

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00073 601 SUPERFAMILY MurD-like peptide ligases, catalytic domain 147 437 IPR036565 GO:0005524|GO:0009058
Cma16g00073 601 PANTHER DIHYDROFOLATE SYNTHETASE-RELATED 115 599 - -
Cma16g00073 601 ProSitePatterns Folylpolyglutamate synthase signature 1. 170 193 IPR018109 GO:0004326|GO:0005524|GO:0009396
Cma16g00073 601 Gene3D - 107 437 IPR036565 GO:0005524|GO:0009058
Cma16g00073 601 Pfam Mur ligase middle domain 172 413 IPR013221 GO:0005524|GO:0009058|GO:0016881
Cma16g00073 601 PANTHER FOLYLPOLYGLUTAMATE SYNTHASE-RELATED 115 599 IPR001645 GO:0004326|GO:0005524|GO:0009396
Cma16g00073 601 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 455 599 IPR036615 GO:0009058|GO:0016881
Cma16g00073 601 TIGRFAM folC: bifunctional protein FolC 150 597 IPR001645 GO:0004326|GO:0005524|GO:0009396
Cma16g00073 601 ProSitePatterns Folylpolyglutamate synthase signature 2. 270 285 IPR018109 GO:0004326|GO:0005524|GO:0009396
Cma16g00073 601 Gene3D - 446 600 IPR036615 GO:0009058|GO:0016881
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00073 K20457 DHFS; dihydrofolate synthase [EC:6.3.2.12] - csv:101208344 897.116
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02718 Cma-Chr4:18339812 Cma16g00073 Cma-Chr16:312869 1.79E-32 dispersed
Cma16g00073 Cma-Chr16:312869 Cma15g00324 Cma-Chr15:1502064 5.83E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g865 Blo06g01075 . . . . . . . Cmo16g00075 . . . . . Sed02g0861 . Cpe14g00058 Bhi01g01449 Tan01g0150 Cmetu09g1713 . . Mch10g0089 . . . . . . . . . . . . . . . . . . . Bda15g00774 . Bpe12g00371 . . . . . Cma16g00073 . Car16g00064 . . . . . . . . . . Cla05g00947 Cam05g1037 Cec05g1042 Cco05g1036 Clacu05g1028 Cmu05g0978 Cre05g1057 . Csa03g02195 Chy06g01258 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010225 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00073 Cma_Chr16 FPKM 6.533767 8.554866 8.993193 10.770424 11.190261 10.691887 10.104636 8.103072 6.806933 7.960505