Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00080 ATGATGAAGAATAGCTTCATCTTCCTCGAGATTATATTGTTTTTAGCAATCATCTGGCCGGGGGTTCTCACTGAGCCAGTTGAAGACAAGCAAGCTTTGCTGGATTTCTTCCATACTATCCCCCACTCGCCTTCTCTCAATTGGAATGAGAATAGTTCTGTGTGCAATTCCTGGACGGGAGTGTTTTGCAACTCTGATGAGTCCAGAGTAGTAGCCCTACGATTACCCGGAAATGGTCTGCTCGGCCCTATCCCTGTGAATACTCTTAGCCGCCTATCTGCGCTGGAGACTCTAAGCCTTAGGTTGAATAGGATAACAGGGCCTTTCCCTTCTGATTTTTCGAATCTACAAAACTTGAGTTCCTTGTATCTGCAATACAACGAGTTTTCTGGTCCTTTGCCTTTAGATTTTTCAATTTGGAATAACCTTAGTGTCATTGATCTATCCAACAATCTCTTTAATGGGAGTATTCCTTCCTCTATCTCAAAATTGAGTCATTTGACAGCTCTGAATCTTGCAAACAACTCGTTTACAGGAGAAATTCCGGACCTCGATATTCCGAGTTTGCAACGGTTAGATCTGTCTAATAATAATCTTACTGGAAATGTGCCTCATTCTCTTCAAAGATTTCCGAGTTGGGTGTTCGTCGGTAACAATGTAACTGCAGAACATGTTGCCATTCCCCCATCTATTCCTCTCCAGCCTCCCAGTACTCAACCGACGAGAAAAGACAAAGGGCTAAGTGAATCTGCAATACTTGGTATTGCAATTGGTGGTTCTGTTATTGGGTTTCTTTTGCTAGTTGTTCTGTTGACTGCTTGTTGGTTGAAAAAAGGAAAAGAACTGAGTTCCTCCATTGAGACCAAAAAGAAGGAAACATTTGTGATGAAAAGGGGTTTTGAGAGCCAAGAACAAAAGAACAACCTTAATTTCTTTCAGGATTCTAATCTTGCATTTGACTTGGAAGACCTGTTGAGAGCATCGGCCGAGGTTCTTGGGAAGGGAACGTTCGGCGTGAGCTACAAGGCAGCTTTGGAGGACTCGACGACCGTGGTAGTGAAGAGGCTGAATCAGGTGAATGTTGGAAAGCGAGAATTTGAACAGCAGATGGAGTTGATTGGAAAAATTAAGCACGAGAACGTCGTTTCTTTACGAGCATACTATTATTCGAAGGATGAGAAGCTTACGGTCTATGACTACTATGGACAAGGGAGCGTGTCTGCAATGTTACACAGTAAAGAAGGAGATGGTTTGCATGTGTTAGATTGGGATACTCGGATGAAGATTGCGATTGGAGCGGCTCGAGGTCTTGCTCATATTCACACAGAAAATGGTGGAAAAAGTTGCCATGGAAACATCAGAGCCTCAAACATTTTCCTCAACTCTAACGGATACGGCTGTGTATCCGACGTCGGGTTGGCTGCATTGATGAACTCAACTCCAGTACCTGCCACAAGAACTCCTGGTTACCGAGCGCCAGAATTGACCGATAGTCGGAGAGTATCGGAAGCAGCTGATGTGTATAGTTTTGGGGTGGTGCTGCTGGAGCTTCTGACTGGAAAGTCCCCCATACACGTTGAAGGTTGTAATGAAGTTGTTAATTTGGTGAGATGGGTGAACTCTGTGGTGAGGGAGGAATGGACAGCAGAAGTGTTCGATGTGGAGCTTCTCAGGTACCCAAATATAGAAGAAGAAATGGTAGAGATGCTGCAAATTGGGTTGTCTTGTGTTGCCAAAATGCCAGAGCAGAGGCCAAAAATGATGGATATCGCGTCAAGAATCGAGCAAGTTCGGCAATTGAGTACCGGAACCCGACCATCGACTGGGTCAAAATCAGCGTATTCGACTCCAGTTCATGTGATGGAAATCGGCTCTTCCTCACATTTACATTGA 1893 44.37 MMKNSFIFLEIILFLAIIWPGVLTEPVEDKQALLDFFHTIPHSPSLNWNENSSVCNSWTGVFCNSDESRVVALRLPGNGLLGPIPVNTLSRLSALETLSLRLNRITGPFPSDFSNLQNLSSLYLQYNEFSGPLPLDFSIWNNLSVIDLSNNLFNGSIPSSISKLSHLTALNLANNSFTGEIPDLDIPSLQRLDLSNNNLTGNVPHSLQRFPSWVFVGNNVTAEHVAIPPSIPLQPPSTQPTRKDKGLSESAILGIAIGGSVIGFLLLVVLLTACWLKKGKELSSSIETKKKETFVMKRGFESQEQKNNLNFFQDSNLAFDLEDLLRASAEVLGKGTFGVSYKAALEDSTTVVVKRLNQVNVGKREFEQQMELIGKIKHENVVSLRAYYYSKDEKLTVYDYYGQGSVSAMLHSKEGDGLHVLDWDTRMKIAIGAARGLAHIHTENGGKSCHGNIRASNIFLNSNGYGCVSDVGLAALMNSTPVPATRTPGYRAPELTDSRRVSEAADVYSFGVVLLELLTGKSPIHVEGCNEVVNLVRWVNSVVREEWTAEVFDVELLRYPNIEEEMVEMLQIGLSCVAKMPEQRPKMMDIASRIEQVRQLSTGTRPSTGSKSAYSTPVHVMEIGSSSHLH 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 351159 353396 - CmaCh16G000800.1 Cma16g00080 310678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00080 630 PANTHER OS05G0588300 PROTEIN 15 621 - -
Cma16g00080 630 SUPERFAMILY L domain-like 39 212 - -
Cma16g00080 630 Gene3D Phosphorylase Kinase; domain 1 291 400 - -
Cma16g00080 630 PANTHER LRR RECEPTOR-LIKE KINASE 15 621 - -
Cma16g00080 630 Gene3D Transferase(Phosphotransferase) domain 1 402 612 - -
Cma16g00080 630 Pfam Leucine Rich Repeat 188 209 IPR001611 GO:0005515
Cma16g00080 630 Gene3D Ribonuclease Inhibitor 28 140 IPR032675 -
Cma16g00080 630 ProSiteProfiles Protein kinase domain profile. 326 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00080 630 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
Cma16g00080 630 Pfam Leucine rich repeat 72 128 IPR001611 GO:0005515
Cma16g00080 630 Gene3D Ribonuclease Inhibitor 141 227 IPR032675 -
Cma16g00080 630 SUPERFAMILY Protein kinase-like (PK-like) 330 594 IPR011009 -
Cma16g00080 630 Pfam Protein tyrosine and serine/threonine kinase 330 593 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01404 Cma-Chr2:8128944 Cma16g00080 Cma-Chr16:351159 0 dispersed
Cma15g01263 Cma-Chr15:8026674 Cma16g00080 Cma-Chr16:351159 0 dispersed
Cma16g00080 Cma-Chr16:351159 Cma20g00302 Cma-Chr20:1479484 0 dispersed
Cma01g01085 Cma-Chr1:7990270 Cma16g00080 Cma-Chr16:351159 6.39E-67 transposed
Cma16g00080 Cma-Chr16:351159 Cma18g01292 Cma-Chr18:9958632 0 wgd
Cma16g00080 Cma-Chr16:351159 Cma02g01096 Cma-Chr2:6522935 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69173 PF07714 PK_Tyr_Ser-Thr 9.20E-33 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00080 - - csv:101207123 1080.47