Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00082 ATGGAGGACATATGGGGTGCGTTCTGTGGAGGGTATGATTGTTCTAGTGGTACAGACAGACCTTGTGGTTTTGACTATGGATTTCTTTCTCATTCCTCTTCATGTATTACTCAAGCCTTGATCATTTCTTTTGATTTTCTACTCTTGATCTTGCTTCTATCCAATATTGTGGGGAAATCAATGAAAAGAGTTCACATGTCGAATCGAATTTGTGGCGGCTCGGGTTTGCGGAGTTTGTCTGCTATCTTCAATGGCTGTGTTGGATTGGTGTATCTTAGTTTAGGCATTTGGAGTTTGGTGGAGAAGGTGAGGAAAGATCACAGTGCTTTGCCTTTGCAGCTGTGGTTATCAGCTTCCTTCCATGGCTTCACATGGTTGTTGGTGAGCTCTATTATTAGCTGCTGGAGTAAACAGCCTCCAAGACCCTTCTTGCGCCTATTGTCCATTGTGGCATTCTTGTTTGCTGGGATTATTTGTATCCTTTCACTTTTTGATGCTGTATCGAGCAAAATGGTATCAGCAAAGATGGTGTTAGATGTTCTATCTGTTCTAGGATCGGTTCTATTATTGTTTTGCTGTTTTGGATGTTTTAGTCACCAAGATAGTGAGGAGAGCATCAATGGGAATGGTCTTTACACCCCATTAAATGGTGAGGCCAATGAAAGCGGTAAGCTTGATCCTCTTACTCCATTAGCCAAAGCTGGATTGTTGGGTAAAATTTCGTTTTGGTGGATGAATCCTTTAATGAAAAGAGGGAAGAAGAAGACTCTCAACTGTGAAGATATACCGATGATGCGCAAGGAGGATCGAGCTGAAAGTTGTTACTCACAGTTCGTAAACCAAATGAATGAGCACAAAAGAAAAGAGCAAAGTTCCCAACCATCAGTCCTCAAAGTCATCCTTTCATGCCATCGGAGGGACATATTCTTGTCTGGATTCTTCGCTTTGTTGAAGATACTCTTTGTCTCTGCTGGTCCTCTGCTTCTTAATGCCTTCATTTTGGTCGCCCAGGGACAGCAAAGCTTCAAATATGAAGGTCTTGTGCTTGCCATTTCACTTTTCTTCTCAAAAAGCATCGAATCCATATCACAAAGGCAATGGTACTTCAGAGCCAGGCTTGTTGGTCTTAAAGTCAGGTCTTTGCTCTCAGCTGCCATTTACAAGAAGCAATTGCGATTGTCCAATGAAGCTAAGTTGATGCACTCGAGTGGCGAAATCATGAACTACGTCACGGTTGACGCGTATAGGATCGGAGAATTCTCATTTTGGTTCCATCAAACTTGGACCACGAGTGTTCAGCTCTGCATTGCACTTCTGATCCTCTACAAAGCAGTGGGAATAGCAGCCATTGCCTCCTTCATCGTGATAGTTCTATGCGTAGTTGGCAATACTCCAATTGCCAAGCTACAACATAAGTTTCAGAGTAAATTAATGGCAGCACAAGACGAGAGATTGAAAACGTTCACTGAGGCTCTTGTAAACATGAAAGTCTTGAAGTTATATGCTTGGGAAACCCATTTCAAGAATGTAATTGAGAAGCTAAGAAAGGAGGAGCACAAGTGGTTGTCAGCCGTGCAATATCGAAAGGGATATAATGGCATTCTCTTTTGGTCATCTCCTGTTATTGTCTCTATTGCAACCTTTGGAGCTTGTAGCTTTTTGAACATACCGCTACATGCCAATAATGTCTTCACTTTTGTATCAGCATTGCGTCTTGTTCAAGAACCTGTTAGATCCATGGGGGATGTCATTGCGGCGATCATTCAAGCAAGGGTCTCATTTACACGGATTGTTAACTTCCTGGAGGCACCTGAGCTGCAAAGTTCAAGTGTTTGTAGAAAGCAAATGAAGATGAATGATGACTGCTCCATTCGGATCAGCTCAGCATCTTTCTCATGGGAAGAGAGTTCAATGAAGCCTACTCTTCATAACATTAATCTAGAGGTCAGGCCAGGTTCAAAGCTTGCAATTTGTGGAGAAGTTGGCTCAGGAAAATCAACTCTTCTAGCAGCCATTCTTGGTGAAATTCCAAATGTCGAGGGAAATATTGAAGTTCATGGAAGGATTGCTTATGTGTCTCAATCAGCATGGATCCAAACAGGGTCCATTCGAGATAACATTTTATTCGGCTCTGAAATGGAGAATTGGAGATATCAAGAAACACTCGAGAAGTGTTCATTGGTGAAGGATCTTGAGTTACTCCCTTATGGTGATCTCACTGAGATTGGGGAAAGAGGAGTAAATCTCAGCGGTGGACAAAAGCAGAGGATTCAACTCGCACGAGCACTGTATCAAAATGCCGATGTATATCTTTTGGATGATCCGTTTAGTGCTGTTGATGCTCATACTGCCACAAGTTTGTTCAATGGATATGTTGTGGAAGCTCTCTCGGGAAAAACAGTTCTTCTTGTGACTCATCAAGTTGATTTCCTGCCTGCTTTTGATTCTGTCCTGCTGATGTCCGACGGGGAAATTCTAGAAGCGGGCCCTTACGATCAGTTGTTGGCACATAGCAAAGAATTTCAGGACCTTGTCAATGCACACAAAGAGACTGCTGGTACTGAAAGGCTTGGAGATTTCTCTGCTATCAAGAGCTTAAGAACATCTTGTAAAGAGATCAAGACATCTTATATAGAGAAGCTGTCTGTAGCAGCATCTGATGATGCTAATCAGTTAATCAAGCAGGAGGAACGCGAAGTGGGGGACTCTGGATTCAAGCCTTATATTCAGTATCTGAATCAGAACAAAGGGTTCTTATTCTTTTCCTTGGATGCTCTCTCCCATTTAGCATTTGTGGCATGTGGGATAACGCAAAACTCTTGGATGGCTTCCAACATTGACAGTCCCAATGTCAGCAACACACGCTTGATCGTAGTTTACTTGTTGATTGGAGTTTCTTCTATATCATTCTTGGTTGCTAGATCAGTTTTAACAGCTCTTTTGGGATTGCAATCATCAAAATCATTGTTTTCTCAGCTACTCACGTCTCTTTTTCGCTCGCCGATGTCCTTCTATGATTCCACACCTCTTGGAAGGATACTCAGTCGGGTCTCAATGGATCTTAGCATTGTTGATCTTGATGTCCCATTTAGTTTAATATTTGCTGTGGGTGCGACCTGCAATGCCTATGCTGCTCTCGGAGTCTTAGCCGTCATCACCTGGCAAGTTCTGTTCATCTCCATACCAACAATCGTTTTGGCAATTTGCTTGCAGAGATACTATTTCGCTTCTGCTAAAGAACTCATGCGTCTTAATGGAACAACGAAGTCAATAGTAGCTAACCATTTGTCGGAATCCATAGCTGGAGCAGTGACAATTAGAGCTTTTGCAGAGGAAGAGCGATTCTTTAAGAAAAATCTTGAATTTGTTGATGGAAATGCCAGTCCATTTTTTCACAATTTTTCAGCCAACGAGTGGCTGATACAGCGGTTAGAGATGCTCAGCGCAGTGGTTGTTGCCTCCGCTGCCTTTTGCATAGTGTTGCTACCAACTGGAAGCTTCAGCCCTGGTTTCGTTGGAATGGCACTCTCTTATGGCCTTTCTTTGAATGTATCACTGGTCTTCTCCATCCAGAATCAATGTAATCTAGCCAATCACATCATTTCTGTAGAGAGATTAAACCAATACATGCATTTATCAAGTGAGGCTCCTGAAATCATCGAAGAGAACCGTCCCCCGACCAACTGGCCTTCTGTCGGAAAAGTGGAGATAATCGACTTGAAGATTCGGTACAGACCCAATTCGCCCCTTGTTCTTCATGGTATTAGCTGCACGTTTGAAGGAGGACATAAGATTGGGATTGTTGGTCGAACTGGGAGTGGGAAATCTACTCTTTTAAGTGCCATATTCCGCTTGGTTGAGCCAGCGGGAGGGAAGATTTTAGTGGATGGTATCGATATCTGCTCGATTGGACTTCATGACCTGCGTTCACGCTTTGGAATTATACCTCAAGATCCAACCCTTTTTAAAGGGACTGTTAGATGCAATTTGGACCCCTTAGTTCAGCATTCTGATGATGAAATATGGGAGGTTCTTGGAAAGTGTCAACTTAGAGAGGCTGTTGAAGAGAAAGAAGCGGGATTGGATTCCTTGGTTGTGGAAGATGGCTCAAACTGGAGCATGGGACAGCGCCAACTTTTCTGTTTGGGTCGTGCGCTGTTGAGGAGAAGTCGAATATTAGTGCTTGACGAAGCAACTGCATCGATCGACAACGCCACGGATATGATTCTGCAGAAAACTATTCGATCCGAGTTCGCAGGCAGTACTGTGATTACAGTTGCTCACAGAATACCAACTGTTATGGATTGCACAATGGTGCTTGCTATCAGTGATGGGAGAATAGCAGAATATGACGAGCCGAGCACATTGATCAAGAGAGAAGGGTCTCTATTTGGACAGCTTGTCAAAGAATACTGGTCTCACTCACCATCTGCAGAATGA 4440 43.13 MEDIWGAFCGGYDCSSGTDRPCGFDYGFLSHSSSCITQALIISFDFLLLILLLSNIVGKSMKRVHMSNRICGGSGLRSLSAIFNGCVGLVYLSLGIWSLVEKVRKDHSALPLQLWLSASFHGFTWLLVSSIISCWSKQPPRPFLRLLSIVAFLFAGIICILSLFDAVSSKMVSAKMVLDVLSVLGSVLLLFCCFGCFSHQDSEESINGNGLYTPLNGEANESGKLDPLTPLAKAGLLGKISFWWMNPLMKRGKKKTLNCEDIPMMRKEDRAESCYSQFVNQMNEHKRKEQSSQPSVLKVILSCHRRDIFLSGFFALLKILFVSAGPLLLNAFILVAQGQQSFKYEGLVLAISLFFSKSIESISQRQWYFRARLVGLKVRSLLSAAIYKKQLRLSNEAKLMHSSGEIMNYVTVDAYRIGEFSFWFHQTWTTSVQLCIALLILYKAVGIAAIASFIVIVLCVVGNTPIAKLQHKFQSKLMAAQDERLKTFTEALVNMKVLKLYAWETHFKNVIEKLRKEEHKWLSAVQYRKGYNGILFWSSPVIVSIATFGACSFLNIPLHANNVFTFVSALRLVQEPVRSMGDVIAAIIQARVSFTRIVNFLEAPELQSSSVCRKQMKMNDDCSIRISSASFSWEESSMKPTLHNINLEVRPGSKLAICGEVGSGKSTLLAAILGEIPNVEGNIEVHGRIAYVSQSAWIQTGSIRDNILFGSEMENWRYQETLEKCSLVKDLELLPYGDLTEIGERGVNLSGGQKQRIQLARALYQNADVYLLDDPFSAVDAHTATSLFNGYVVEALSGKTVLLVTHQVDFLPAFDSVLLMSDGEILEAGPYDQLLAHSKEFQDLVNAHKETAGTERLGDFSAIKSLRTSCKEIKTSYIEKLSVAASDDANQLIKQEEREVGDSGFKPYIQYLNQNKGFLFFSLDALSHLAFVACGITQNSWMASNIDSPNVSNTRLIVVYLLIGVSSISFLVARSVLTALLGLQSSKSLFSQLLTSLFRSPMSFYDSTPLGRILSRVSMDLSIVDLDVPFSLIFAVGATCNAYAALGVLAVITWQVLFISIPTIVLAICLQRYYFASAKELMRLNGTTKSIVANHLSESIAGAVTIRAFAEEERFFKKNLEFVDGNASPFFHNFSANEWLIQRLEMLSAVVVASAAFCIVLLPTGSFSPGFVGMALSYGLSLNVSLVFSIQNQCNLANHIISVERLNQYMHLSSEAPEIIEENRPPTNWPSVGKVEIIDLKIRYRPNSPLVLHGISCTFEGGHKIGIVGRTGSGKSTLLSAIFRLVEPAGGKILVDGIDICSIGLHDLRSRFGIIPQDPTLFKGTVRCNLDPLVQHSDDEIWEVLGKCQLREAVEEKEAGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRSEFAGSTVITVAHRIPTVMDCTMVLAISDGRIAEYDEPSTLIKREGSLFGQLVKEYWSHSPSAE 1479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 358537 364265 + CmaCh16G000820.1 Cma16g00082 310680

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00082 1479 Pfam ABC transporter 642 776 IPR003439 GO:0005524
Cma16g00082 1479 Pfam ABC transporter 1252 1400 IPR003439 GO:0005524
Cma16g00082 1479 ProSitePatterns ABC transporters family signature. 749 763 IPR017871 GO:0005524
Cma16g00082 1479 Pfam ABC transporter transmembrane region 924 1178 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma16g00082 1479 Pfam ABC transporter transmembrane region 308 576 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma16g00082 1479 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 956 1198 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma16g00082 1479 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1235 1469 IPR003439 GO:0005524
Cma16g00082 1479 CDD ABCC_MRP_domain2 1233 1453 - -
Cma16g00082 1479 SUPERFAMILY ABC transporter transmembrane region 297 602 IPR036640 GO:0005524|GO:0016021
Cma16g00082 1479 Gene3D - 599 862 IPR027417 -
Cma16g00082 1479 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 309 589 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma16g00082 1479 Gene3D - 1218 1470 IPR027417 -
Cma16g00082 1479 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 69 1479 - -
Cma16g00082 1479 Gene3D ABC transporter type 1, transmembrane domain 299 598 IPR036640 GO:0005524|GO:0016021
Cma16g00082 1479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 619 847 IPR027417 -
Cma16g00082 1479 CDD ABCC_MRP_domain1 624 824 - -
Cma16g00082 1479 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 624 847 IPR003439 GO:0005524
Cma16g00082 1479 SUPERFAMILY ABC transporter transmembrane region 928 1218 IPR036640 GO:0005524|GO:0016021
Cma16g00082 1479 CDD ABC_6TM_ABCC_D2 917 1210 IPR044726 GO:0140359
Cma16g00082 1479 Gene3D ABC transporter type 1, transmembrane domain 884 1216 IPR036640 GO:0005524|GO:0016021
Cma16g00082 1479 CDD ABC_6TM_ABCC_D1 310 597 IPR044746 GO:0140359
Cma16g00082 1479 SMART AAA_5 1261 1453 IPR003593 -
Cma16g00082 1479 SMART AAA_5 651 824 IPR003593 -
Cma16g00082 1479 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 69 1479 - -
Cma16g00082 1479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1225 1462 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00082 K05666 ABCC2; ATP-binding cassette, subfamily C (CFTR/MRP), member 2 - csv:101210136 2523.43
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma16g00082 Cma18g01291 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00763 Cma-Chr8:4577527 Cma16g00082 Cma-Chr16:358537 0 dispersed
Cma16g00082 Cma-Chr16:358537 Cma01g01091 Cma-Chr1:8027145 0 dispersed
Cma18g00720 Cma-Chr18:6515218 Cma16g00082 Cma-Chr16:358537 0 dispersed
Cma16g00082 Cma-Chr16:358537 Cma18g01291 Cma-Chr18:9946556 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g846 . . . Bda07g01915 Bpe03g00167 . . . Cmo16g00086 Cmo18g01320 . . . . . . Cpe14g00066 Bhi01g01434 . . . Hepe07g0101 Mch10g0103 . . . . . . . . Cone1ag0952 Cone5ag0661 . . Lsi05g01169 . . Cme06g01064 . Blo09g00046 . . . . . . . . . Cma16g00082 Cma18g01291 Car16g00072 Car18g01208 Cpe09g00051 . . . . . . . . Cla05g00937 Cam05g1026 Cec05g1030 Cco05g1026 Clacu05g1015 Cmu05g0968 Cre05g1049 . Csa03g02180 Chy06g01273 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003473 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 3 1 1 1 1 1 4 1 8 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00082 Cma_Chr16 FPKM 22.271425 26.121525 50.53595 50.483032 22.661768 20.614206 21.419596 27.557775 23.02109 25.605597