Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cma16g00086	ATGGAGAATATGCAGTATGCTGAGGAGCTCGTGAGGGAGTTCCTTGTGTTTAGGGGGTTCACAAGTACTCTTCAAGCTTATGAGAGTGAGCTGAGCACAGATATTGGAAAGGGGTTCCAAGTGGACAAGATTTTGGATTTAATCTTCTCTATATATATACCCAAATTCGAGGCAGAAAAGTTGGTGGGGCTACTAGGTTTTTTCAAGCAGTGCCTAGCTTCATCATCTGACAACACATTTCTTTCAACCGTGTCAAAATTGGAGGTTTCCATTCTTCGTTATTATATGGTACATGCCATACAATCAGGAAGGACAGATAAAGTTCTGGAGTTCCTTAAAACCAATGGCAACGATCTACTGCAAAGGACTAAGGATTGGACTCCATGGTTTGCCATGCCATACCTAAAGAATCCGAAGTTTGATCCCCACTTTCACGTTTATTTTACAAAGGAGTGGTATGAAGCACTGCATGTTTCTGTAAGGAATTTCTTCAGCGAAGTATTCAATGAAAAGTTTTTCTTAACAAAACCACGCATTCCTGCTCTACTAAAGCTCAGTTCAGAGAGGACTACAGTTAATCATTTGAAACGAGATATCAAGCAGCTAAATCTTAAATTGACGCAACTTCAGGCTTTATTGGAGGAAAAAGAGGCTCATCTTTGCCACTTAAGAAGCCTGGTGAACAGTTCTTCAAGTGTGTTGCACGAAGAGAAAATTACTTCATCAAATGATGCTCAAGAGCCTTGTCCTTCTCCAACTACACTAGTTGGGGAAACGAAACTGACTCGAGATGGGGTTTTAGCTGGCTCTGACAAGTATATTGCTTCAAATGAAGATTCAAGTTCTTCATTAACTCTTTGCACGGGAGACAGTGAAGTTGGTGATTCTAGTCATAGTTATGAAGATGGCCGTCAAATGGTGAATAGCGGAGAAGCCCATGTACAAGAAGATTTTCCTGAAGTGAAAGTAGAATTTCAGGAGACATTTTTGGGCCACACAAGTCCAATCAGTCGTTGCCGTTTTTCTGCATCTGGAAACAATGTAGCAAGTGCTTCTTTGGATGGTACAGTCAGGATATGGACATATGACCCATCCACTCCAGCATCCAGAAATGCAACAATTTACTGTGGAGCGGAGATTATGTCACTTGATTGGGAATGTAAATCTGATCGCCTTCTTCTAATAGGCACCGCTGATGCGGGGATTAAAGCATGGAATGTTGATGCAAAGAGAGTTGTGTGTGATCTCAACACGACTGATATGTTCCCTAGTGTGTTGGATATCAAGTGCAGTCCTGTTGAATCTATTTTCGTCTCTGCAGCAGCATCTAGAGGGCATGGTTCAAGTTATGTGGATAGTTTGGGGTTTGCTTCACTCACCGTATGGAACATGAGAACATGGAAGTCAATGACAGTCCTTCCTCTTGGCAAGGATCCACCTGCAATTACTTCAATGTGCTTCAATCATAACGGGAAAATTTTAGCTGCTGCTGCTACTGATGGAATGATTCACATGTTTGGTATCCTTACAATACATTTGAAATGCTTAAGTTTTTCTTTACGGAAGTCATGCAATCCTGGATCTGAATCAGAAATGGGTGGAGAAAACCTTGGTGGTTTTTTGGAACTTTTGCAGTCCCTCAAGGGGTTTTGCGATTCCGAGAGCTCTTTGTCTTTGAGACATGAAATGGCTTTGGATGTAAATGGAAAGAGACTCTTGGCTACATCAAATTCAGTGCGAGCCCCCATATACCAGGTGGTGGCTACGAGATCGATTCACAGCACATTCCTGTGTCCCAGCTCGGGATCTGTGCATGACCGAGTAGACAGGGCTCGGTCTTTTGGTATTGGCTCCAAACTGTTGCGGCATGAGAAGAAGAGTTGGAATTTTGCATACAGGAGAAGTCTAATCACATCCAAGGGAGCTACTCAAGCTGAAGTTGTTCCGGTATCACCTGAGGATGTTCAGAAGCCTTCATTGGCTGCTAATGCAAGTGAATTTCAATTTTCACGTCTTAATACCATTCTGAATCTTACTTATCAGGCAGATGAGCAATTTGAACATTTACGAGCAGTTCAACAACTTGGTGATACACCGGTTGGTATGTGGTCCAAGCCAACAGTTAGACGTAAGACAAAAATTGTGTGTACGATTGGACCTTCGACTGACACGAAGGAAATGATTTGGAAACTGGCTGAAGCTGGAATGAATGTTGCTCGATTGAATATGTCTCATGGAGACCATGCATCTCATCAGAAAGTTATAGATTTAGTCAGAGAATACAACGCCCAATCACAAGACAATTGCATTGCAATCATGCTAGACACCAAGGCAAGCTATTTGTATCCCCATATTCAATACATTCATTTCATTAACCCAACAATAAATGGTCCTGAGGTTAGGAGTGGTGATCTACCACAACCAATATTGTTAGAAAGTGGTCAGGAATTCACTTTCACCATACGGAGGGGTGTTAGCACTGCAGATTCTGTCAGTGTGAACTATGATGACTTTGTTAATGATGTAGAAGTTGGGGACATGATTCTTGTTGATGGTGGAATGATGTCGTTGATGGTGAAGTCTAAAACAGAGGATTCTGTCAAGTGTGAAGTTGTTGATGGAGGAGAGCTCAAGTCCAGGCGACATTTAAATGTTCGAGGGAAAAGTGCAACACTGCCTTCCATTACTGAGAAGGATTGGGATGATATTAAATTTGGAGTTGACAACAAAGTTGATTTTTACGCTGTCTCTTTCGTCAAGGATGCACAAGTAGTTCATGAGTTGAAGAAGTATCTTAAGAGCTGTGATGCTGATATTCATGTGATTGTAAAAATAGAAAGCGCAGACTCCATACCAAATTTGCATTCAATTATTACAGCTTCTGATGGGGCAATGGTTGCGAGAGGTGATCTTGGTGCTGAACTCCCTATTGAAGAGGTTCCACTTCTGCAGGAGGAGATAATCAACCTGTGTCGAGGCATGGGGAAGGCTGTCATTGTGGCTACTAACATGCTTGAGAGTATGATTGTTCATCCGACACCAACCAGAGCAGAAGTATCTGACATTGCTATTGCAGTTAGAGAGGGTGCTGATGCAATCATGCTGTCTGGAGAAACTGCTCATGGAAAATTCCCGTTAAAAGCTGTGAAAGTAATGCATACAGTTGCCTTACGGACTGAAGCAACCATAGAAGGTGGTCGAATGCCATTGAATCTTGGTCAAACATTCAAGAATCATATGAGCGAGATGTTTGCTTATCATGCAACGATGATGTCCAACACTCTTGGAACCTCAATAGTTGTCTTCACTAGAACTGGTTTCATGGCAATCCTCCTCAGCCATTATCGGCCATCTGGGACGACATTTGCCTTTACAAATGATAAAAGGATACAACAAAGGTTGGCTTTATACCAGGGAGTGTGCCCCATATACATGCAATTCTCCGATGATGCTGAGCAGACCTTTAGCGATGCCTTATCTATGCTGCAGAGGCAAGGAATGGTGAAGGAAGGAGAAGAGGTAGCACTCGTTCAGAGTGGCAAACAACCCATATGGCGGTTCCCATCTACTCACAATATTCAACCTAGTTTAGCTCTGATAAAAATTTTGGCTCACGCAGCTCCTAAGCCTCTTATCATCAGTAGTGTGTAG	3651	42.37	MENMQYAEELVREFLVFRGFTSTLQAYESELSTDIGKGFQVDKILDLIFSIYIPKFEAEKLVGLLGFFKQCLASSSDNTFLSTVSKLEVSILRYYMVHAIQSGRTDKVLEFLKTNGNDLLQRTKDWTPWFAMPYLKNPKFDPHFHVYFTKEWYEALHVSVRNFFSEVFNEKFFLTKPRIPALLKLSSERTTVNHLKRDIKQLNLKLTQLQALLEEKEAHLCHLRSLVNSSSSVLHEEKITSSNDAQEPCPSPTTLVGETKLTRDGVLAGSDKYIASNEDSSSSLTLCTGDSEVGDSSHSYEDGRQMVNSGEAHVQEDFPEVKVEFQETFLGHTSPISRCRFSASGNNVASASLDGTVRIWTYDPSTPASRNATIYCGAEIMSLDWECKSDRLLLIGTADAGIKAWNVDAKRVVCDLNTTDMFPSVLDIKCSPVESIFVSAAASRGHGSSYVDSLGFASLTVWNMRTWKSMTVLPLGKDPPAITSMCFNHNGKILAAAATDGMIHMFGILTIHLKCLSFSLRKSCNPGSESEMGGENLGGFLELLQSLKGFCDSESSLSLRHEMALDVNGKRLLATSNSVRAPIYQVVATRSIHSTFLCPSSGSVHDRVDRARSFGIGSKLLRHEKKSWNFAYRRSLITSKGATQAEVVPVSPEDVQKPSLAANASEFQFSRLNTILNLTYQADEQFEHLRAVQQLGDTPVGMWSKPTVRRKTKIVCTIGPSTDTKEMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVREYNAQSQDNCIAIMLDTKASYLYPHIQYIHFINPTINGPEVRSGDLPQPILLESGQEFTFTIRRGVSTADSVSVNYDDFVNDVEVGDMILVDGGMMSLMVKSKTEDSVKCEVVDGGELKSRRHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKKYLKSCDADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIINLCRGMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAIMLSGETAHGKFPLKAVKVMHTVALRTEATIEGGRMPLNLGQTFKNHMSEMFAYHATMMSNTLGTSIVVFTRTGFMAILLSHYRPSGTTFAFTNDKRIQQRLALYQGVCPIYMQFSDDAEQTFSDALSMLQRQGMVKEGEEVALVQSGKQPIWRFPSTHNIQPSLALIKILAHAAPKPLIISSV	1216

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
16	369796	382084	-	CmaCh16G000860.1	Cma16g00086	310684

Annotation

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Cma16g00086	1216	ProSitePatterns	Pyruvate kinase active site signature.	939	951	IPR018209	GO:0004743\|GO:0006096
Cma16g00086	1216	TIGRFAM	pyruv_kin: pyruvate kinase	710	1181	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
Cma16g00086	1216	SMART	WD40_4	322	361	IPR001680	GO:0005515
Cma16g00086	1216	SMART	WD40_4	367	406	IPR001680	GO:0005515
Cma16g00086	1216	SMART	WD40_4	466	507	IPR001680	GO:0005515
Cma16g00086	1216	Pfam	Pyruvate kinase, barrel domain	710	1064	IPR015793	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
Cma16g00086	1216	SUPERFAMILY	Phosphoenolpyruvate/pyruvate domain	702	1063	IPR015813	GO:0003824
Cma16g00086	1216	SUPERFAMILY	WD40 repeat-like	326	577	IPR036322	GO:0005515
Cma16g00086	1216	ProSiteProfiles	Trp-Asp (WD) repeats profile.	329	370	IPR001680	GO:0005515
Cma16g00086	1216	Gene3D	-	798	892	IPR015806	GO:0004743\|GO:0006096
Cma16g00086	1216	Coils	Coil	185	219	-	-
Cma16g00086	1216	Pfam	Pyruvate kinase, alpha/beta domain	1086	1178	IPR015795	-
Cma16g00086	1216	Gene3D	-	314	613	IPR015943	GO:0005515
Cma16g00086	1216	Gene3D	-	1071	1187	IPR036918	-
Cma16g00086	1216	PRINTS	Pyruvate kinase family signature	941	967	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
Cma16g00086	1216	PRINTS	Pyruvate kinase family signature	1037	1053	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
Cma16g00086	1216	PRINTS	Pyruvate kinase family signature	911	925	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
Cma16g00086	1216	PRINTS	Pyruvate kinase family signature	768	784	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
Cma16g00086	1216	PRINTS	Pyruvate kinase family signature	993	1017	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
Cma16g00086	1216	PRINTS	Pyruvate kinase family signature	968	992	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
Cma16g00086	1216	PRINTS	Pyruvate kinase family signature	1018	1036	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
Cma16g00086	1216	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	329	360	-	-
Cma16g00086	1216	Pfam	WD domain, G-beta repeat	327	360	IPR001680	GO:0005515
Cma16g00086	1216	Gene3D	-	710	1057	IPR040442	-
Cma16g00086	1216	PANTHER	PYRUVATE KINASE	679	1194	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
Cma16g00086	1216	PANTHER	PLASTIDIAL PYRUVATE KINASE 2	679	1194	-	-
Cma16g00086	1216	SUPERFAMILY	PK C-terminal domain-like	1047	1182	IPR036918	-
Cma16g00086	1216	SUPERFAMILY	PK beta-barrel domain-like	798	889	IPR011037	-

Pathway

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cma16g00086	K00873	PK, pyk; pyruvate kinase [EC:2.7.1.40]	K24760	csv:101206887	1051.58

WGDs- Genes

Select	Gene_1	Gene_2	Event_name
	Cma16g00086	Cma18g01290	CST

Dupl-types

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Cma16g00086	Cma-Chr16:369796	Cma19g00449	Cma-Chr19:5417607	0	dispersed
	Cma16g00086	Cma-Chr16:369796	Cma18g01290	Cma-Chr18:9940941	0	wgd

Deco-Alignment

Select	Vvi1	Blo1	Blo2	Bda1	Bda2	Bpe1	Bpe2	Bma1	Bma2	Cmo1	Cmo2	Cma1	Cma2	Car1	Car2	Sed1	Cpe1	Cpe2	Bhi1	Tan1	Cmetu1	Lac1	Hepe1	Mch1	Lcy1	Cla1	Cam1	Cec1	Cco1	Clacu1	Cmu1	Cre1	Cone1	Cone2	Cone3	Cone4	Lsi1	Csa1	Chy1	Cme1	Blo3	Blo4	Bda3	Bda4	Bpe3	Bpe4	Bma3	Bma4	Sed2	Cmo3	Cmo4	Cma3	Cma4	Car3	Car4	Cpe3	Cpe4	Bhi2	Tan2	Cmetu2	Lac2	Hepe2	Mch2	Lcy2	Cla2	Cam2	Cec2	Cco2	Clacu2	Cmu2	Cre2	Lsi2	Csa2	Chy2	Cme2
	Vvi16g836	.	.	.	Bda07g01913	Bpe03g00165	.	.	.	Cmo16g00089	Cmo18g01319	.	.	Car02g00961	.	Sed05g0275	.	Cpe14g00069	Bhi01g01431	Tan01g0170	Cmetu04g2585	.	Hepe07g0104	Mch10g0106	.	.	.	.	.	.	.	.	Cone1ag0946	Cone5ag0665	.	.	Lsi05g01173	.	.	Cme06g01059	.	Blo09g00048	.	.	.	.	.	.	.	.	.	Cma16g00086	Cma18g01290	Car16g00075	Car18g01207	Cpe09g00052	.	.	.	.	.	.	.	.	Cla05g00935	Cam05g1022	Cec05g1026	Cco05g1022	Clacu05g1011	Cmu05g0964	Cre05g1045	.	Csa03g02178	Chy06g01277	.

Syn-Orthogroups

Select	Orthogroup	Bda	Bhi	Blo	Bma	Bpe	Cam	Car	Cco	Cec	Chy	Cla	Clacu	Cma	Cme	Cmetu	Cmo	Cmu	Cone	Cpe	Cre	Csa	HCH	Hepe	Lac	Lcy	Lsi	Mch	Sed	Tan	Vvi	Total
	OG0010151	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	3	1	1	32

Transcriptome

Select	Gene	Chr	Type	da1	da2	da3	da4	da5	da6	da7	da8	da9	da10
	Cma16g00086	Cma_Chr16	FPKM	21.954487	21.97294	15.235436	15.835508	53.689041	60.960464	54.296936	36.528355	34.239834	34.875267