Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00090 ATGGAAGAAGACCAACCACGGCCACAGCCGCCGCCGTCGCCGCCGACGAGAAGCTACACATTAACGGCATCGTCAATCTCCTACGCCAAATCCACGGCCGCTGCCACCGTGTCGTCATACAGCTGGTTCAAATCCTGCACCGCCGCCGAACCCACCTACATTATCCGTGACATCTCATTCACAGCCCACCCTTCTCAAATCCTCGCCATCGTTGGCCCAAGTGGCGCCGGAAAATCAACTCTCCTAGACATTCTCGCAGCCCGAACCTCGCCAACGCACGGCGTCCTCCTCCTCAACTCCGCCCCTCTCAACCCGTCTACCTTCCGTAAACTCTCCGCTTACGTTCCACAGCACGACGCCTGTCTACCTCTCTTAACCGTCTCCGAGACCTTCGCCTTTGCCGCCCGCCTCCTCCTCCCAGAAAAATCCCAAATTCTCACCACCGTCAACTCCCTTTTGGCAGACCTCAACCTCACCCACGTCGCCAACACCCGCCTCGTCTCTGGCCTGTCAGGCGGAGAACGGCGGCGAGTCTCAATCGGACTCAGCCTCCTCCACGATCCAGCCATTCTACTCCTGGACGAACCCACCTCCGGCCTCGACAGTGCATCAGCCTTTAACGTGATCTCAACGCTTAAATCCATCTGCGTTTCGCGAAATCGGACGGTGGTGCTTTCAATTCACCAGCCGAGTTATCGAATTTTGTCGGCTATCGATGAGATTCTCTTGCTCTGTGAAGGGTCCGTGATTCACCATGGGACTGTTTCTAGCCTCGAGAGTTTTTTGGTTTCCAAGGAATTTTGTATTCCTCCACAGCTTAATCCTTTGGAATTTGCTATGGAAATTCTGAACCAGCTCACGCCTTATTCTACTTCAGATTCTTCGCCCGTCGTTGCTAATGACGTCATTACAGGCCCAAATTATAAAGATAATCAAATCAAATATAGAAGCTCGAGATTGCATGAAATCTTGACCCTCCATTGGCGATTTTGGATCATCATTTTTAGAACCAGGCAGCTGCTTTTGACCAACACCTTGGAGGCGCTCATCGTTGGAATTGTTTTAGGTACAATTTACTTAAACATCGGAATGGACAAGGCAGGCATAGAGAAAAGATTCGGTCTTTTCGCGTTCACACTAACATTCCTACTCTCTTCCACAACCGAAACTCTCCCCATTTTCCTCAACGAACGCCCAATTCTCCTCCGTGAAACCTCCGGCGGCGTCTACCGTCTCTCCTCCTACATAATCGCCAACACCCTCGTTTTCCTTCCCTATCTCCTCACCATCGCCGTCATCTACTCTGTCTCCGTCTACTTCCTCGTCGGGCTATGCGCCACGTGGCAGGCCTTCTCCTACTTCGTCCTCGTGATTTGGGTCATCATTCTGATGGCCAATTCGTTTGTCTTGTTCTTGAGCTCCCTCGCTCCGAATTTCATCGCCGGGACGTCACTGGTTACCGTTCTCCTCGCCGCGTTTTTCCTTTTCTCCGGCTACTTTATATCCCAGGAGAGCTTGCCCAAGTTCTGGGTGTTTATGAACTTCATGTCCATGTACAAGTACGCTCTGGACGCCTTGCTTATAAACGAATATTCCTGCTTGGTCTCCAGATGCTTCATTTGGTTTGAGGAGGATCGAAAGGAGTGTTTGGTTACGGGTGGAGATGTGTTGGTGAAGAGAGGGCTTGATGAGAATCAACGGTGGAGGAATGTTTATGCTTTGGTCGCGTTTTTTGTGTTTTATCGCCTTCTTTGCTTGCTTGTTTTGATTCGAAGGGTTTCCACATCTAAGAAATAA 1797 50.81 MEEDQPRPQPPPSPPTRSYTLTASSISYAKSTAAATVSSYSWFKSCTAAEPTYIIRDISFTAHPSQILAIVGPSGAGKSTLLDILAARTSPTHGVLLLNSAPLNPSTFRKLSAYVPQHDACLPLLTVSETFAFAARLLLPEKSQILTTVNSLLADLNLTHVANTRLVSGLSGGERRRVSIGLSLLHDPAILLLDEPTSGLDSASAFNVISTLKSICVSRNRTVVLSIHQPSYRILSAIDEILLLCEGSVIHHGTVSSLESFLVSKEFCIPPQLNPLEFAMEILNQLTPYSTSDSSPVVANDVITGPNYKDNQIKYRSSRLHEILTLHWRFWIIIFRTRQLLLTNTLEALIVGIVLGTIYLNIGMDKAGIEKRFGLFAFTLTFLLSSTTETLPIFLNERPILLRETSGGVYRLSSYIIANTLVFLPYLLTIAVIYSVSVYFLVGLCATWQAFSYFVLVIWVIILMANSFVLFLSSLAPNFIAGTSLVTVLLAAFFLFSGYFISQESLPKFWVFMNFMSMYKYALDALLINEYSCLVSRCFIWFEEDRKECLVTGGDVLVKRGLDENQRWRNVYALVAFFVFYRLLCLLVLIRRVSTSKK 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 398509 400621 + CmaCh16G000900.1 Cma16g00090 310688

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00090 598 Pfam ABC transporter 56 198 IPR003439 GO:0005524
Cma16g00090 598 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 37 271 IPR003439 GO:0005524
Cma16g00090 598 PANTHER ABC TRANSPORTER G FAMILY MEMBER 8 8 593 - -
Cma16g00090 598 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 8 593 - -
Cma16g00090 598 Gene3D - 42 267 IPR027417 -
Cma16g00090 598 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 51 259 IPR027417 -
Cma16g00090 598 Pfam ABC-2 type transporter 322 531 IPR013525 GO:0016020|GO:0140359
Cma16g00090 598 ProSitePatterns ABC transporters family signature. 170 184 IPR017871 GO:0005524
Cma16g00090 598 SMART AAA_5 64 256 IPR003593 -
Cma16g00090 598 Pfam ABC-2 type transporter 228 292 IPR043926 GO:0140359
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00090 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - csv:101208704 935.636
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma16g00090 Cma18g01281 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00090 Cma-Chr16:398509 Cma16g00791 Cma-Chr16:4359035 1.02E-67 dispersed
Cma10g01172 Cma-Chr10:8426706 Cma16g00090 Cma-Chr16:398509 7.22E-09 transposed
Cma16g00445 Cma-Chr16:2216001 Cma16g00090 Cma-Chr16:398509 1.13E-156 transposed
Cma18g01283 Cma-Chr18:9914126 Cma16g00090 Cma-Chr16:398509 1.03E-45 transposed
Cma19g01031 Cma-Chr19:8800427 Cma16g00090 Cma-Chr16:398509 6.06E-162 transposed
Cma20g00111 Cma-Chr20:517318 Cma16g00090 Cma-Chr16:398509 0 transposed
Cma20g01054 Cma-Chr20:7888355 Cma16g00090 Cma-Chr16:398509 7.44E-167 transposed
Cma16g00090 Cma-Chr16:398509 Cma18g01281 Cma-Chr18:9910798 3.16E-176 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g798 . . Bda05g00099 . Bpe03g00256 . . . Cmo16g00094 Cmo18g01312 . . . . . . Cpe14g00074 Bhi01g01422 . . . Hepe07g0110 Mch10g0112 . . . . . . . . . . Cone14ag0047 Cone15ag0051 Lsi05g01179 . . . Blo07g00359 . . . . . . . . . . Cma16g00090 Cma18g01281 Car16g00080 . Cpe09g00057 . . . . . . . . Cla05g00929 Cam05g1016 Cec05g1020 Cco05g1016 Clacu05g1005 Cmu05g0958 Cre05g1039 . Csa03g01761 Chy06g00989 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010883 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00090 Cma_Chr16 FPKM 13.090774 12.873837 3.108233 2.6699 17.497198 15.147003 17.371437 0.0 0.0 0.0