Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00091 ATGTTTCTTCGAGCGATCGGACGGCCATTATTGGCCAAGGTGAAGCAGACGACGGGGATCGTCGGTCTGGATGTTGTTCCCAACGCCCGAGAGGTCCTGATCGGCCTTTACAGTAAAACCCTAAAGGAGATCCAGGCCGTTCCCGAGGACGAAGGATACCGTAAGGCGGTTGAGAGCTTCACGAACCACCGCTTGAAAGTCTGCCAGGAGGAAGAGGACTGGGAGAAAATTGAAAAACGGCTTGGCTGTGGTCAGGTCGAGGAGCTAATCGAAGAGGCTCAGGACGAACTCAAGCTCATTGCTAAAATGATCGAGTGGGATCCCTGGGGTGTTCCTGATGACTACGAATGCGAAGTGATCGAGAATGATGCTCCAGTACCCAAGCACGTTCCTCTGCACCGACCCGGTCCTCTTCCTGAAGAGTTTTACAAAACGCTGGAAGCCATTAGTGGTGATGGTGCACAAAAAGTAGACTCAGCCGAGAAAACATCTCAGAGTGCCTGTATGCAGGCCATCACTCTTAGTCCGGAGAACGCCGAGTATTATGTTGACCGCGCTCAGGCCAACATCAAAGTCGGGCTTTACACCGAGGCTCTTGCTGATGCTAACAAGGCAATTGAAATTGACCCTTCAAATTCAAAAGCCTACTTGCGCAGAGGCATCACATATATGAAGCTGGAGGAATATAAAACAGCAAAGTTTTGTTTGGAAATAGGCTCTGTTTTGGCCTCAGGAGACTCAAGATTCACGAAATTAATAAAAGAATGTGAAGAGCTGATTGGGAACAAGATTGAAGCCAAAGTGAAAACAGAGGAGAAAGAGGTGACATTATATGGGGATGCAGCTTTGGACAAGTGTTTCAAAGACATGTGTAAGGACGCGGACGAGGATACAAGAAGGGCGATGGAAAGATCATTTGTAAGGCTTCTTGTTGCTGAATTGGAATTGAACGGCACGGTCCTCTCCACCAACTGGATGGATGTGGGATCAAACAAGCTTGAAGCTAGCCCTCCACATGGTATGGAGTTCAAGAAATGGGATACCTGA 1047 48.42 MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESFTNHRLKVCQEEEDWEKIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVIENDAPVPKHVPLHRPGPLPEEFYKTLEAISGDGAQKVDSAEKTSQSACMQAITLSPENAEYYVDRAQANIKVGLYTEALADANKAIEIDPSNSKAYLRRGITYMKLEEYKTAKFCLEIGSVLASGDSRFTKLIKECEELIGNKIEAKVKTEEKEVTLYGDAALDKCFKDMCKDADEDTRRAMERSFVRLLVAELELNGTVLSTNWMDVGSNKLEASPPHGMEFKKWDT 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 401467 404735 - CmaCh16G000910.1 Cma16g00091 310689

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00091 348 Pfam ETC complex I subunit conserved region 22 88 IPR006806 GO:0022904
Cma16g00091 348 PANTHER BNAA02G10640D PROTEIN 1 161 - -
Cma16g00091 348 Pfam SGS domain 263 346 IPR007699 -
Cma16g00091 348 ProSiteProfiles TPR repeat profile. 179 212 IPR019734 GO:0005515
Cma16g00091 348 ProSiteProfiles SGS domain profile. 249 348 IPR007699 -
Cma16g00091 348 SUPERFAMILY TPR-like 168 266 IPR011990 GO:0005515
Cma16g00091 348 SMART tpr_5 179 212 IPR019734 GO:0005515
Cma16g00091 348 SMART tpr_5 213 246 IPR019734 GO:0005515
Cma16g00091 348 Gene3D Tetratricopeptide repeat domain 155 281 IPR011990 GO:0005515
Cma16g00091 348 PANTHER NADH-UBIQUINONE OXIDOREDUCTASE 13 KD-B SUBUNIT 1 161 IPR006806 GO:0022904
Cma16g00091 348 Pfam Tetratricopeptide repeat 203 233 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00091 K03949 NDUFA5; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 5 - csv:101209685 320.087
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma16g00091 Cma18g01280 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00091 Cma-Chr16:401467 Cma11g01949 Cma-Chr11:12806464 1.75E-11 dispersed
Cma18g01280 Cma-Chr18:9907780 Cma16g00091 Cma-Chr16:401467 4.84E-27 transposed
Cma16g00091 Cma-Chr16:401467 Cma18g01278 Cma-Chr18:9901980 4.64E-110 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g790 . . Bda05g00098 Bda07g01908 Bpe03g00160 . Bma10g01265 Bma14g02037 Cmo16g00095 Cmo18g01311 . . . . Sed07g0976 . Cpe14g00075 Bhi01g01421 Tan01g0179 Cmetu06g2016 . Hepe07g0111 Mch10g0114 . . . . . . . . Cone1ag1200 Cone5ag0900 . . Lsi05g01180 . . . Blo07g00360 Blo09g00053 . . . . . . . . . Cma16g00091 Cma18g01280 . Car18g01194 Cpe09g00058 . . . . . . . . Cla05g00928 Cam05g1015 Cec05g1019 Cco05g1015 Clacu05g1004 Cmu05g0957 Cre05g1038 . Csa03g01760 Chy06g00988 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0028512 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00091 Cma_Chr16 FPKM 20.938368 20.491842 16.049274 14.368326 19.443466 22.062544 15.997088 13.611038 13.73825 13.113216