Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00092 ATGGCAACTTCGGAAGAGAATAGTGCATTGTTCCCGATATTTATTTTGACAATAATGGCACTGCCTTTAGTGCCTTATACTATTCTTAGGCTTTGTCGCGCTGCTTCAAAGAAGGCAAAGATTATACATTGCCAGTGTTCTGAATGCTCCCGTTCAGGGAAGTTCCGCAAGTCAATATTTAAGCGAATAGCAAATTTCTCAACTTACAGCAACTTGACATTGGTACTTCTTTGGATTTTAATGTTCGTGTTGGTGTATTACATTAAAAATATGAGCCGGGAGATTCAAGTCTTCGAGCCATTTACTATTCTAGGATTGGATACTGGGGCTTCAGAGGCAGACATAAAAAAGGCATACAGGAGACTTTCTATCCTATACCATCCAGATAAAAATCCAGATCCAGAGGCCCATAAATATTTCGTGGAGTTCATATCTAAGGCTTATCAAGCTTTAACAGATCCAATATCCCGGGAGAATTATGAAAAATATGGCCATCCAGATGGAAAGCAGGGGTTCCAAATGGGAATTGCACTCCCTCAATTCTTACTAAATATTGATGGGGCATCTGGTGGGATACTCTTACTGTGGATTGTTGGAGTTTGTATTATCTTGCCCTTGGTAATAGCCGTTATATATCTTTCAAGGTCGTCAAAATACACTGGAAACTATGTCATGCGTCAGACACTTTCCACATATTATTACTTCATGAAGCCTTCTTTGGCACCAAGCAAAGTCATGGATGTCTTTATCAAGGCAGCTGAGTATGTGGAAATGCCAGTTCGTAGAACTGATAATGAGCCTCTTCAGAAGATATTTGGACTAGTTAGGAGTGAGTTGAATCTTGACCTTAAGAACATTAAACAAGAGCAGGCAAAGTTTTGGAAGCAACATCCAGCCCTTGTCAAGACACAATTGTTGATTCAAGCTCAATTAACTCGTGAATTTGCCAACTTGCCTCCACCTTTGGATGGTGACTTTAAACTTGTGCTGGAACTTGCTCCTCGCCTTCTTGAAGAATTAATGAAGATGGCACTGATCCCACGGAATGTCCAAGGACAAGGATGGCTACGTCCTGCAACTGGGGTCATTGAGCTCTCACAATGTATCATTCAGGCTGTACCTCTCAGTGCAAGAAAGGCCACTGGAGGATCGTCTGAAGGTATTGCACCATTTCTACAGTTGCCGCATTTTAGCGAGGCAGTTGTCAAGAAGATAGCCCGCAAGGTAGTTTTCTGCTGTACCAATGCGTGTTCTTTTTCAAAGCAGAAAGTGAGAGCATTTGAGGATCTTCAAAAACTTGCTCAAGAAGAACGTGCCGAGCTGCTTGCTCAAGTGGGTGGTTTTTTGCCTGGTGAAGTCCAAGATGTCGAAACAGTGCTTGAAATGATGCCGTCTGTGACAGTTGCTATCTCATGTGAAACAGAAGGCGAAGAGGGTATCCAAGAGGGTGATACTGTCACCATTCAGGCTTGGGTGACACTCAAACGCCGAAATGGGCTGGTGGGTGCTCTCCCACATGCCCCCTACTACCCGTTTCACAAAGAAGAGAACTTCTGGTTCCTGCTTGCAGATCCGAATTCAAACAATGTCTGGTTTTACCAGAAGGTCAGTTTCATGGATGAGGCTACGGCCATAACTGTCGCTTCCAAGGCGATCGAGGAACAAATGGAGGGATCTGGAGCAAGTGTGAAGGAAACCAGTGCTGCAGTTAGGGAAGCAGTGGAGAAAGTGAAAGCGGGATCTAGACTGGTACTAGGCAAGTTCCACGCCCCAGCTGAGGGGAACTACAATTTAACTTGTTACTGCCTGTGTGATTCTTGGATCGGATGCGATAACAAGACAAACCTGAAACTGAAAATCTTGAAACGAACCCGTGCGGGTACCCGTGGTGGCTTTATGGCAGAAGAAGGGCCATCCATGGAAGATGGAATTGAAGAGGAAGAGGAAAATGATGAAGAAGAATACGAGGATTACGAGAGTGAGTACAGTGAAGATGAAGCTGATGAACAAGATGTGAAAAAGAAGGGCCCCGTTGCCAATGGAAAAGCACGTAAGCAGCAGAGTTCAAGTTCTGAGGACTCTGGCTCTGATGATGAATGA 2100 44.14 MATSEENSALFPIFILTIMALPLVPYTILRLCRAASKKAKIIHCQCSECSRSGKFRKSIFKRIANFSTYSNLTLVLLWILMFVLVYYIKNMSREIQVFEPFTILGLDTGASEADIKKAYRRLSILYHPDKNPDPEAHKYFVEFISKAYQALTDPISRENYEKYGHPDGKQGFQMGIALPQFLLNIDGASGGILLLWIVGVCIILPLVIAVIYLSRSSKYTGNYVMRQTLSTYYYFMKPSLAPSKVMDVFIKAAEYVEMPVRRTDNEPLQKIFGLVRSELNLDLKNIKQEQAKFWKQHPALVKTQLLIQAQLTREFANLPPPLDGDFKLVLELAPRLLEELMKMALIPRNVQGQGWLRPATGVIELSQCIIQAVPLSARKATGGSSEGIAPFLQLPHFSEAVVKKIARKVVFCCTNACSFSKQKVRAFEDLQKLAQEERAELLAQVGGFLPGEVQDVETVLEMMPSVTVAISCETEGEEGIQEGDTVTIQAWVTLKRRNGLVGALPHAPYYPFHKEENFWFLLADPNSNNVWFYQKVSFMDEATAITVASKAIEEQMEGSGASVKETSAAVREAVEKVKAGSRLVLGKFHAPAEGNYNLTCYCLCDSWIGCDNKTNLKLKILKRTRAGTRGGFMAEEGPSMEDGIEEEEENDEEEYEDYESEYSEDEADEQDVKKKGPVANGKARKQQSSSSEDSGSDDE 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 405179 410197 + CmaCh16G000920.1 Cma16g00092 310690

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00092 699 PRINTS DnaJ domain signature 136 156 IPR001623 -
Cma16g00092 699 PRINTS DnaJ domain signature 101 119 IPR001623 -
Cma16g00092 699 PRINTS DnaJ domain signature 156 175 IPR001623 -
Cma16g00092 699 PRINTS DnaJ domain signature 119 134 IPR001623 -
Cma16g00092 699 SMART dnaj_3 98 156 IPR001623 -
Cma16g00092 699 MobiDBLite consensus disorder prediction 630 699 - -
Cma16g00092 699 Gene3D C2 domain 465 627 IPR035892 -
Cma16g00092 699 SUPERFAMILY E set domains 468 622 IPR014756 -
Cma16g00092 699 PANTHER DNAJ PROTEIN ERDJ2-LIKE 1 690 - -
Cma16g00092 699 SUPERFAMILY Sec63 N-terminal domain-like 244 464 - -
Cma16g00092 699 Pfam DnaJ domain 100 161 IPR001623 -
Cma16g00092 699 SMART Sec63_2 209 618 IPR004179 -
Cma16g00092 699 Gene3D - 218 373 - -
Cma16g00092 699 Pfam Sec63 Brl domain 222 616 IPR004179 -
Cma16g00092 699 MobiDBLite consensus disorder prediction 639 666 - -
Cma16g00092 699 PANTHER SEC63 DOMAIN-CONTAINING 1 690 - -
Cma16g00092 699 SUPERFAMILY Chaperone J-domain 97 192 IPR036869 -
Cma16g00092 699 Gene3D DnaJ domain 99 182 IPR036869 -
Cma16g00092 699 ProSiteProfiles dnaJ domain profile. 99 164 IPR001623 -
Cma16g00092 699 Coils Coil 641 675 - -
Cma16g00092 699 CDD DnaJ 99 153 IPR001623 -
Cma16g00092 699 Gene3D - 389 462 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00092 K09540 SEC63, DNAJC23; translocation protein SEC63 - csv:101209193 1223.38
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma16g00092 Cma18g01277 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00092 Cma-Chr16:405179 Cma14g00051 Cma-Chr14:221645 9.42E-13 dispersed
Cma16g00092 Cma-Chr16:405179 Cma18g01277 Cma-Chr18:9896245 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g785 . . . Bda07g01902 Bpe03g00158 . . Bma14g02040 Cmo16g00097 Cmo18g01308 . . . . . . Cpe14g00076 . . . . . . . . . . . . . . . . Cone14ag0052 Cone15ag0058 Lsi05g01183 . . Cme06g01046 . Blo09g00057 . . . . . . . . . Cma16g00092 Cma18g01277 Car16g00082 Car18g01191 Cpe09g00060 . . . . . . . . Cla05g00924 Cam05g1012 Cec05g1016 Cco05g1012 Clacu05g1001 Cmu05g0954 Cre05g1035 . Csa03g01758 Chy06g00986 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005404 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 2 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00092 Cma_Chr16 FPKM 24.281519 26.241121 22.968861 26.348202 20.591108 18.710447 20.019712 39.312584 36.086834 35.541092