Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00093 ATGATCGAAACTGCTCTGGCCGTTCGATTCTCCGGCGGCGCAAACTTCTGCTACTCCTCCGCTTTGTCGAATCACCGTCCAGCTTGGACTTCGGAGGATGTAACTTGTATAGGCCATGCTAACAGCTCTTGCCGGCTTTTTCAATCTTGCGCTTCCGACGTACAGTGGAAAAGATGCCAAAGACTCAATAGTAGGTCCCTCTTGGGAAAGAACAATCTCAAAAAGAATGGAATTCAAGCATCAGCAGAGAATTTGGGCTCTGCATCAGATCCAATTAAACAAAATAGGAGATTACAGTATCATCCATCTGAGGAGTTTGTGAAATCAATAACAGAGATTGCTGAGGATGTTAGACCTACCTCTGCTGAAACTACGAGAACAATTATCGAGGTAAATAGCAAAGCAACATTAATGTTTGCGGGTTTGATTAACGATGAAGTTCAGGAAAATATTATCTGGCCGGACCTACCCTATGTAACTGACGAACATGGAAATATCTATTTTCAAGTGAAGAGCACTGAAGAGACCTTGCAAAACCTAAATTCAGAAAATAACTTTGTGCAAGTTCTTATTGGCCTTGATTCCATGGAAATGATCGATGAGCTGGAGTTGTTTGGTCCATCAGAAGTTGAATTTGGATATGAAGAGCTTGATGATGAAGTTACAAATGATGGTGATGATGAAGATGAAGATGATGATGGCGAGGATGATGATGATGATGCAGATGATGAATATGATAGGGACTGGGTTTCTGTCATAGATGATGAAGATGATCAAAATTACTCTGATGAGACCCTAGGAGACTGGGCAAAACTGGAGACAATGCGTTCTTCACATCCAATGCATTTTGCTAACAAGCTTTCAGAGTCTGCATCGGATGATCCTATCGATTGTATGGAAGAGCCCCCAGCAACTTTACTGATCCAAGGTTTCCTAAGACCTGCATTCAGTGAAGAGCATACTGTTATTCAGAGACATCTATCCAGCCGTCATTCAAGTAATGGTGATATACACGAGGCTCAGAAACTTGAAGATAACCTTGAGAATCGTGGTAGGATCAATCATCAGGGTCATGAATCAAGCTCATCTAAAGATGGTTTAAACATGGTAGATGGATTGGCTGAAAATATTCCAGTGAAAGATGCTTCATTTTACCGGTTGGAGATGATAAAGGTTCAGCTATGTACAGGACATGCGCATCCAAGCAACATTGAAATAGAGGATCTCATGAAAGCTCAACCTGATGCAATCGGGCGCACAGCCGAAAAAATTATTTCTCGTTTGAAAGCAGGTGGAGAAAAGACCAAACAAGCGCTCAAGTCTCTGTGTTGGAGATGCAAGGGCATTCAGGTTGAGGAGGCAGTAATCAATGGTATAGATTCACTTGGATTTGATGTGAGGGTTTGCTCCGGAACTCAGGTCCAAACGTTGCGGTTTGCATTTGATACACGAGCGACCTCAGAGTTCAGTGCGGAAAAACAGCTGGACGACTTGCTTTTCCCGAGGATTCATTCCAAACCTCCAAAAATGAAACAAACGCATCCAAAATGA 1551 42.42 MIETALAVRFSGGANFCYSSALSNHRPAWTSEDVTCIGHANSSCRLFQSCASDVQWKRCQRLNSRSLLGKNNLKKNGIQASAENLGSASDPIKQNRRLQYHPSEEFVKSITEIAEDVRPTSAETTRTIIEVNSKATLMFAGLINDEVQENIIWPDLPYVTDEHGNIYFQVKSTEETLQNLNSENNFVQVLIGLDSMEMIDELELFGPSEVEFGYEELDDEVTNDGDDEDEDDDGEDDDDDADDEYDRDWVSVIDDEDDQNYSDETLGDWAKLETMRSSHPMHFANKLSESASDDPIDCMEEPPATLLIQGFLRPAFSEEHTVIQRHLSSRHSSNGDIHEAQKLEDNLENRGRINHQGHESSSSKDGLNMVDGLAENIPVKDASFYRLEMIKVQLCTGHAHPSNIEIEDLMKAQPDAIGRTAEKIISRLKAGGEKTKQALKSLCWRCKGIQVEEAVINGIDSLGFDVRVCSGTQVQTLRFAFDTRATSEFSAEKQLDDLLFPRIHSKPPKMKQTHPK 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 410970 418390 + CmaCh16G000930.1 Cma16g00093 310691

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00093 516 SUPERFAMILY FMN-binding split barrel 304 499 - -
Cma16g00093 516 Gene3D - 413 512 IPR037119 -
Cma16g00093 516 MobiDBLite consensus disorder prediction 218 247 - -
Cma16g00093 516 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 2 510 - -
Cma16g00093 516 PANTHER CREG1 PROTEIN 2 510 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00093 - - - cmo:103484131 832.787
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma16g00093 Cma18g01275 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01634 Cma-Chr6:10174478 Cma16g00093 Cma-Chr16:410970 9.35E-47 dispersed
Cma16g00093 Cma-Chr16:410970 Cma18g01275 Cma-Chr18:9885048 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g783 . . . . . . Bma10g01259 . Cmo16g00099 Cmo18g01306 . . . . Sed13g0111 . Cpe14g00078 Bhi01g01416 Tan01g0184 Cmetu06g0411 . Hepe07g0116 Mch10g0119 . . . . . . . . Cone1ag1197 Cone5ag0895 . . Lsi05g01185 . . . Blo07g00370 . . . . . . . . . . Cma16g00093 Cma18g01275 Car16g00083 Car18g01188 Cpe09g00062 . . . . . . . . Cla05g00922 Cam05g1010 Cec05g1014 Cco05g1010 Clacu05g0998 Cmu05g0952 Cre05g1033 . Csa03g01755 Chy06g00984 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008655 0 1 1 1 0 1 2 1 1 1 1 1 2 1 3 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00093 Cma_Chr16 FPKM 1.428716 1.424606 4.261056 4.061051 34.153595 33.66713 37.253246 7.302848 5.642555 6.020813