Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00095 ATGGCATCGACCGTGAAGGACGACGTCGATCGATTGTTTGAATGCTTCAAGTGCGGTGTTTCTCCTCCTCAATCTGCTGTGAGAGTAAAAAAGAAAAGAAAAAGTAAATTGAAGCCCGAGTGTTCAATAGACTCTACGAGTCCAGCTTCTGGCTCAGTTAAAGAAATGCAGGACAATGCATCGAGCGTCCAAGTTACCGAGGAGAAAATTGATTTGACAAGTAAAGAAAAAGGTTCTAGTTCTAAGAAGTTCTCGCCAATCGTATTTTATGGTTCACCTAGAGGCGTCCCTCCCAAGAGGCCATCTAGTTTGTGGAGACTATTGCGTGAAATTCGTGTTGATCTTTCTGAGCAAAGCAGATTCAAGTTAAGCAAGCAAGTGTGGGCCACATTTCCCAGACAAGAAGAAGCAATTAAGTTTGGCAGAGAGCACACCGATGTTCATATTTTTAGTTATCAAGATCACTTTAATGGACAAAGGAGATTTCTAGTTTCATCATACAGTGAGTTCTGGCAAAGGTATAAAAGCATGGATTCAAAATTTCGCCACCATTATGAAGTAATTCAAGAGGGTGCTCCGTGTCACCTTTACTTTGATTTGGAGTACAGTAGAAGAATCAATACGGGAAAAAATGAAGACGTAATGGTTGATTCCTTGATATCTGTTGTTCTAGAAGCCTTAAATGAAAAGTATTCAATTCAAGGAAGCTTTGACTGGATACTAGAGCTTGATTCCTCAAACGAAGAGAAGTTCTCTCGCCACCTAATAATCCGCATACCAAAAGTTGCTTTTAAGGATAACTCGCATGCAGGAGCATTTGTTGGTGAGATATGTTCGCGGATTTGTATTGGAAAAATGGAAGGGAGATACGAAGAACTGTTTATCAAAAAAGATTCAAGCTCCATTGAATCTCCTAGCCATCTGTTTGTGGACAATGCAGTTTATTCTAGAAATCGTTGCTTTCGTTTAGCTTTGTCATCAAAGGCAGGGAAGACTTCTGTGCTTCTACCTACAGGAAGACATGCACGTGCAAAAATGTGTGAGGAAGACATGTTCATGGCATCCTTGATCTGCAACGTTGATGCTGACTGTGAGAAGCTTCTGGTTTGCAAAACAGATTTCGACTGCGTGAGGACATTACAATTTGAAATGGAGGAGAAATGTAATTTTGGACGGCAGTTCAGTTTCGCCAAAGAAGCACCGTTGACAGGTTACATGAATGATGTTTCTGCATCTTCTTGCATGGGAACGTCTCCATTCCCAGCTCTGGATAAGTTTGTTCAATCAGTTGCCTCCACTGGTAGTGTTTCAGGAAAAATACGCTGCTGGTACTGGTTCTCAGAATATGGACTAATAGTCTACAGCATGTCCCGTAATAGATATTGTGAACGAATTGGTCGAGAACACAAAAGCAATCATGTGATGTATGTTGTCGACCTTAGGAGGGCTGCCTATTATCAGAAGTGTCACGATCCGGATTGTAGAGGTTACCGATCTCCTCTGCGTCCAACTCCGATTGACTCCATTCCTAGTCAATTGGTTTCAACGGATTCAGAACAAATATCAAATGACAGAGAGTCAACCGATGAATGTATCAACTATCGATCTCTAAGCAACGACCAAAATTGTCTTTTGCTTCTTAGTGATAAGAACATTACAGACAGCAGTGTCCAAGACTCCTGGTGGCTTGAAGCGATGAGAGTGGCAGACGATGTTGAAAACAAACGGATTAAGGACCCTGGAAAACTAGACTTCGAAGACGATGACTGGTGGATGGCTGTGGAAAATTCTATAAAAGATTTGTCCACTTGA 1812 41.5 MASTVKDDVDRLFECFKCGVSPPQSAVRVKKKRKSKLKPECSIDSTSPASGSVKEMQDNASSVQVTEEKIDLTSKEKGSSSKKFSPIVFYGSPRGVPPKRPSSLWRLLREIRVDLSEQSRFKLSKQVWATFPRQEEAIKFGREHTDVHIFSYQDHFNGQRRFLVSSYSEFWQRYKSMDSKFRHHYEVIQEGAPCHLYFDLEYSRRINTGKNEDVMVDSLISVVLEALNEKYSIQGSFDWILELDSSNEEKFSRHLIIRIPKVAFKDNSHAGAFVGEICSRICIGKMEGRYEELFIKKDSSSIESPSHLFVDNAVYSRNRCFRLALSSKAGKTSVLLPTGRHARAKMCEEDMFMASLICNVDADCEKLLVCKTDFDCVRTLQFEMEEKCNFGRQFSFAKEAPLTGYMNDVSASSCMGTSPFPALDKFVQSVASTGSVSGKIRCWYWFSEYGLIVYSMSRNRYCERIGREHKSNHVMYVVDLRRAAYYQKCHDPDCRGYRSPLRPTPIDSIPSQLVSTDSEQISNDRESTDECINYRSLSNDQNCLLLLSDKNITDSSVQDSWWLEAMRVADDVENKRIKDPGKLDFEDDDWWMAVENSIKDLST 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 422820 428730 - CmaCh16G000950.1 Cma16g00095 310693

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00095 603 Pfam Herpesviridae UL52/UL70 DNA primase 445 505 - -
Cma16g00095 603 PANTHER DNA-DIRECTED PRIMASE / POLYMERASE PROTEIN 32 576 IPR044917 GO:0003887|GO:0003896|GO:0042276
Cma16g00095 603 MobiDBLite consensus disorder prediction 41 68 - -
Cma16g00095 603 MobiDBLite consensus disorder prediction 23 83 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00095 K22761 PRIMPOL; DNA-directed primase/polymerase protein [EC:2.7.7.102 2.7.7.7] - csv:101209857 1057.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00095 Cma-Chr16:422820 Cma18g01273 Cma-Chr18:9879312 3.78E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g781 . . Bda05g00095 . Bpe03g00261 . Bma10g01257 . Cmo16g00102 . . . . . . . . Bhi01g01413 . . . . . . . . . . . . . Cone1ag1196 . . . Lsi05g01187 . . . Blo07g00371 . . . . . . . . . . Cma16g00095 . Car16g00085 . . . . . . . . . . Cla05g00920 Cam05g1008 Cec05g1012 Cco05g1008 Clacu05g0996 . . . Csa03g01753 Chy06g00982 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009435 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00095 Cma_Chr16 FPKM 2.384887 3.017078 3.527809 3.058595 2.636971 2.182883 2.72441 3.35394 3.710892 3.243412